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The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots

The Plant cell, 2016-12, Vol.28 (12), p.2937-2951

2016

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Predicting variant deleteriousness in non-human species: applying the CADD approach in mouse

BMC bioinformatics, 2018-10, Vol.19 (1), p.373-373, Article 373

2018

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Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity

PLoS computational biology, 2017-09, Vol.13 (9), p.e1005734

2017

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Dysregulated signaling, proliferation and apoptosis impact on the pathogenesis of TCRγδ+ T cell large granular lymphocyte leukemia

PloS one, 2017, Vol.12 (4), p.e0175670-e0175670

2017

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Shifts in growth strategies reflect tradeoffs in cellular economics

Molecular systems biology, 2009, Vol.5 (1), p.323-n/a

2009

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Hap10: reconstructing accurate and long polyploid haplotypes using linked reads

BMC bioinformatics, 2020-06, Vol.21 (1), p.253-253, Article 253

2020

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BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

Gigascience, 2021-01, Vol.10 (1)

2021

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Global DNA Compaction in Stationary-Phase Bacteria Does Not Affect Transcription

Cell, 2018-08, Vol.174 (5), p.1188-1199.e14

2018

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Revealing determinants of translation efficiency via whole-gene codon randomization and machine learning

Nucleic acids research, 2023-03, Vol.51 (5), p.2363

2023

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Domestication Shapes Recombination Patterns in Tomato

Molecular biology and evolution, 2022-01, Vol.39 (1)

2022

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Topology of molecular interaction networks

BMC systems biology, 2013-09, Vol.7 (1), p.90-90

2013

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Insertional mutagenesis combined with acquired somatic mutations causes leukemogenesis following gene therapy of SCID-X1 patients

The Journal of clinical investigation, 2008-09, Vol.118 (9), p.3143-3150

2008

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Circulating Human CD27-IgA+ Memory B Cells Recognize Bacteria with Polyreactive Igs

The Journal of immunology (1950), 2015-08, Vol.195 (4), p.1417-1426

2015

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A blind benchmark of analysis tools to infer kinetic rate constants from single-molecule FRET trajectories

Nature communications, 2022-09, Vol.13 (1), p.5402-5402, Article 5402

2022

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Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing data

BMC genomics, 2019-11, Vol.20 (1), p.818-818, Article 818

2019

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Metabolic Model of the Phytophthora infestans -Tomato Interaction Reveals Metabolic Switches during Host Colonization

mBio, 2019-07, Vol.10 (4)

2019

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The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool

BMC genomics, 2021-04, Vol.22 (1), p.265-265, Article 265

2021

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Genome duplication and mutations in ACE2 cause multicellular, fast-sedimenting phenotypes in evolved Saccharomyces cerevisiae

Proceedings of the National Academy of Sciences - PNAS, 2013-11, Vol.110 (45), p.E4223-E4231

2013

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De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology

Microbial cell factories, 2012-03, Vol.11 (1), p.36-36, Article 36

2012

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Making the difference: integrating structural variation detection tools

Briefings in bioinformatics, 2015-09, Vol.16 (5), p.852-864

2015

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AraQTL – workbench and archive for systems genetics in Arabidopsis thaliana

The Plant journal : for cell and molecular biology, 2017-03, Vol.89 (6), p.1225-1235

2017

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The miR-200c/141-ZEB2-TGFβ axis is aberrant in human T-cell prolymphocytic leukemia

Haematologica (Roma), 2022-01, Vol.107 (1), p.143

2022

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Sequence‐based analysis of protein degradation rates

Proteins, structure, function, and bioinformatics, 2017-09, Vol.85 (9), p.1593-1601

2017

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Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data

PLoS computational biology, 2015-08, Vol.11 (8), p.e1004336-e1004336

2015

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Correcting palindromes in long reads after whole-genome amplification

BMC genomics, 2018-11, Vol.19 (1), p.798-798, Article 798

2018

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The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots

Predicting variant deleteriousness in non-human species: applying the CADD approach in mouse

Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity

Dysregulated signaling, proliferation and apoptosis impact on the pathogenesis of TCRγδ+ T cell large granular lymphocyte leukemia

Shifts in growth strategies reflect tradeoffs in cellular economics

Hap10: reconstructing accurate and long polyploid haplotypes using linked reads

BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

Global DNA Compaction in Stationary-Phase Bacteria Does Not Affect Transcription

Revealing determinants of translation efficiency via whole-gene codon randomization and machine learning

Domestication Shapes Recombination Patterns in Tomato

Topology of molecular interaction networks

Insertional mutagenesis combined with acquired somatic mutations causes leukemogenesis following gene therapy of SCID-X1 patients

Circulating Human CD27-IgA+ Memory B Cells Recognize Bacteria with Polyreactive Igs

A blind benchmark of analysis tools to infer kinetic rate constants from single-molecule FRET trajectories

Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing data

Metabolic Model of the Phytophthora infestans -Tomato Interaction Reveals Metabolic Switches during Host Colonization

The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool

Genome duplication and mutations in ACE2 cause multicellular, fast-sedimenting phenotypes in evolved Saccharomyces cerevisiae

De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology

Making the difference: integrating structural variation detection tools

AraQTL – workbench and archive for systems genetics in Arabidopsis thaliana

The miR-200c/141-ZEB2-TGFβ axis is aberrant in human T-cell prolymphocytic leukemia

Sequence‐based analysis of protein degradation rates

Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data

Correcting palindromes in long reads after whole-genome amplification

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