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Microbiome differential abundance methods produce different results across 38 datasets

Nature communications, 2022-01, Vol.13 (1), p.342-342, Article 342

2022

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Enhancement of the gut barrier integrity by a microbial metabolite through the Nrf2 pathway

Nature communications, 2019-01, Vol.10 (1), p.89-89, Article 89

2019

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Nature biotechnology, 2013-09, Vol.31 (9), p.814-821

2013

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TTLL1 and TTLL4 polyglutamylases are required for the neurodegenerative phenotypes in pcd mice

PLoS genetics, 2022-04, Vol.18 (4), p.e1010144

2022

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IslandViewer: an integrated interface for computational identification and visualization of genomic islands

Bioinformatics, 2009-03, Vol.25 (5), p.664-665

2009

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Investigation of the impact of commonly used medications on the oral microbiome of individuals living without major chronic conditions

PloS one, 2021-12, Vol.16 (12), p.e0261032-e0261032

2021

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Oral microbial signatures associated with age and frailty in Canadian adults

Scientific reports, 2024-04, Vol.14 (1), p.9685-9685, Article 9685

2024

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Parafoveal cone function in choroideremia assessed with adaptive optics optoretinography

Scientific reports, 2024-04, Vol.14 (1), p.8339-8339, Article 8339

2024

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Morphology of the normative human cone photoreceptor mosaic and a publicly available adaptive optics montage repository

Scientific reports, 2024-10, Vol.14 (1), p.23166-10, Article 23166

2024

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Detecting genomic islands using bioinformatics approaches

Nature reviews. Microbiology, 2010-05, Vol.8 (5), p.373-382

2010

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Short-term Assessment of Subfoveal Injection of Adeno-Associated Virus-Mediated hCHM Gene Augmentation in Choroideremia Using Adaptive Optics Ophthalmoscopy

JAMA ophthalmology, 2022-04, Vol.140 (4), p.411

2022

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Differences in adiposity and diet quality among individuals with inflammatory bowel disease in Eastern Canada

PloS one, 2018-07, Vol.13 (7), p.e0200580-e0200580

2018

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Predicting the Functional Potential of the Microbiome from Marker Genes Using PICRUSt

Methods in molecular biology (Clifton, N.J.), 2018, Vol.1849, p.169

2018

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Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes

Genome biology and evolution, 2019-10, Vol.11 (10), p.2750-2766

2019

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Evaluation of genomic island predictors using a comparative genomics approach

BMC bioinformatics, 2008-08, Vol.9 (1), p.329-329, Article 329

2008

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IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis

Nucleic acids research, 2015-07, Vol.43 (W1), p.W104

2015

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Age-dependent effects of RPE65 gene therapy for Leber's congenital amaurosis: a phase 1 dose-escalation trial

The Lancet (British edition), 2009-11, Vol.374 (9701), p.1597-1605

2009

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The association of virulence factors with genomic islands

PloS one, 2009-12, Vol.4 (12), p.e8094-e8094

2009

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In Vivo Autofluorescence Imaging of the Human and Macaque Retinal Pigment Epithelial Cell Mosaic

Investigative ophthalmology & visual science, 2009-03, Vol.50 (3), p.1350-1359

2009

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High-resolution adaptive optics retinal imaging of cellular structure in choroideremia

Investigative ophthalmology & visual science, 2014-10, Vol.55 (10), p.6381-6397

2014

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GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework

PloS one, 2013-07, Vol.8 (7), p.e69885

2013

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Evaluation of Dose and Safety of AAV7m8 and AAV8BP2 in the Non-Human Primate Retina

Human gene therapy, 2017-02, Vol.28 (2), p.154-167

2017

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Interactions in the microbiome: communities of organisms and communities of genes

FEMS microbiology reviews, 2014-01, Vol.38 (1), p.90-118

2014

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Reverse and conventional chemical ecology approaches for the development of oviposition attractants for Culex mosquitoes

PloS one, 2008-08, Vol.3 (8), p.e3045

2008

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Investigating the oral microbiome in retrospective and prospective cases of prostate, colon, and breast cancer

NPJ biofilms and microbiomes, 2023-05, Vol.9 (1), p.23-23, Article 23

2023

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Microbiome differential abundance methods produce different results across 38 datasets

Enhancement of the gut barrier integrity by a microbial metabolite through the Nrf2 pathway

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

TTLL1 and TTLL4 polyglutamylases are required for the neurodegenerative phenotypes in pcd mice

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

Investigation of the impact of commonly used medications on the oral microbiome of individuals living without major chronic conditions

Oral microbial signatures associated with age and frailty in Canadian adults

Parafoveal cone function in choroideremia assessed with adaptive optics optoretinography

Morphology of the normative human cone photoreceptor mosaic and a publicly available adaptive optics montage repository

Detecting genomic islands using bioinformatics approaches

Short-term Assessment of Subfoveal Injection of Adeno-Associated Virus-Mediated hCHM Gene Augmentation in Choroideremia Using Adaptive Optics Ophthalmoscopy

Differences in adiposity and diet quality among individuals with inflammatory bowel disease in Eastern Canada

Predicting the Functional Potential of the Microbiome from Marker Genes Using PICRUSt

Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes

Evaluation of genomic island predictors using a comparative genomics approach

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis

Age-dependent effects of RPE65 gene therapy for Leber's congenital amaurosis: a phase 1 dose-escalation trial

The association of virulence factors with genomic islands

In Vivo Autofluorescence Imaging of the Human and Macaque Retinal Pigment Epithelial Cell Mosaic

High-resolution adaptive optics retinal imaging of cellular structure in choroideremia

GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework

Evaluation of Dose and Safety of AAV7m8 and AAV8BP2 in the Non-Human Primate Retina

Interactions in the microbiome: communities of organisms and communities of genes

Reverse and conventional chemical ecology approaches for the development of oviposition attractants for Culex mosquitoes

Investigating the oral microbiome in retrospective and prospective cases of prostate, colon, and breast cancer

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