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Influence of Cucurbiturils on the Production of Reactive Oxygen Species by T- and B-Lymphocytes, Platelets and Red Blood Cells

International journal of molecular sciences, 2023-01, Vol.24 (2), p.1441

2023

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DRUMMER—rapid detection of RNA modifications through comparative nanopore sequencing

Bioinformatics, 2022-05, Vol.38 (11), p.3113-3115

2022

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GNN-based embedding for clustering scRNA-seq data

Bioinformatics, 2022-01, Vol.38 (4), p.1037-1044

2022

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Graph attention network for link prediction of gene regulations from single-cell RNA-sequencing data

Bioinformatics (Oxford, England), 2022-09, Vol.38 (19), p.4522-4529

2022

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XGBLC: an improved survival prediction model based on XGBoost

Bioinformatics, 2022-01, Vol.38 (2), p.410-418

2022

Volltextzugriff (PDF)

CellVGAE: an unsupervised scRNA-seq analysis workflow with graph attention networks

Bioinformatics (Oxford, England), 2022-02, Vol.38 (5), p.1277-1286

2022

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E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants

Bioinformatics (Oxford, England), 2022-11, Vol.38 (23), p.5168-5174

2022

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A convolutional neural network and graph convolutional network-based method for predicting the classification of anatomical therapeutic chemicals

Bioinformatics (Oxford, England), 2021-09, Vol.37 (18), p.2841-2847

2021

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MARSY: a multitask deep-learning framework for prediction of drug combination synergy scores

Bioinformatics (Oxford, England), 2023-04, Vol.39 (4)

2023

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WMSA: a novel method for multiple sequence alignment of DNA sequences

Bioinformatics (Oxford, England), 2022-11, Vol.38 (22), p.5019-5025

2022

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LncLocFormer: a Transformer-based deep learning model for multi-label lncRNA subcellular localization prediction by using localization-specific attention mechanism

Bioinformatics (Oxford, England), 2023-12, Vol.39 (12)

2023

Volltextzugriff (PDF)

Deep single-cell RNA-seq data clustering with graph prototypical contrastive learning

Bioinformatics (Oxford, England), 2023-06, Vol.39 (6)

2023

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DeepMicroGen: a generative adversarial network-based method for longitudinal microbiome data imputation

Bioinformatics (Oxford, England), 2023-05, Vol.39 (5)

2023

Volltextzugriff (PDF)

blitzGSEA: efficient computation of gene set enrichment analysis through gamma distribution approximation

Bioinformatics, 2022-04, Vol.38 (8), p.2356-2357

2022

Volltextzugriff (PDF)

scKWARN: Kernel-weighted-average robust normalization for single-cell RNA-seq data

Bioinformatics (Oxford, England), 2024-02, Vol.40 (2)

2024

Volltextzugriff (PDF)

The adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell data

Bioinformatics (Oxford, England), 2023-02, Vol.39 (2)

2023

Volltextzugriff (PDF)

nf-core/nanostring: a pipeline for reproducible NanoString nCounter analysis

Bioinformatics (Oxford, England), 2024-01, Vol.40 (1)

2024

Volltextzugriff (PDF)

HGC: fast hierarchical clustering for large-scale single-cell data

Bioinformatics (Oxford, England), 2021-11, Vol.37 (21), p.3964-3965

2021

Volltextzugriff (PDF)

spatialGE: quantification and visualization of the tumor microenvironment heterogeneity using spatial transcriptomics

Bioinformatics (Oxford, England), 2022-04, Vol.38 (9), p.2645-2647

2022

Volltextzugriff (PDF)

Inference of 3D genome architecture by modeling overdispersion of Hi-C data

Bioinformatics (Oxford, England), 2023-01, Vol.39 (1)

2023

Volltextzugriff (PDF)

Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data

Bioinformatics (Oxford, England), 2023-10, Vol.39 (10)

2023

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TsImpute: an accurate two-step imputation method for single-cell RNA-seq data

Bioinformatics (Oxford, England), 2023-12, Vol.39 (12)

2023

Volltextzugriff (PDF)

RNAget: an API to securely retrieve RNA quantifications

Bioinformatics (Oxford, England), 2023-04, Vol.39 (4)

2023

Volltextzugriff (PDF)

scSemiGAN: a single-cell semi-supervised annotation and dimensionality reduction framework based on generative adversarial network

Bioinformatics (Oxford, England), 2022-11, Vol.38 (22), p.5042-5048

2022

Volltextzugriff (PDF)

PoDCall: positive droplet calling and normalization of droplet digital PCR DNA methylation data

Bioinformatics (Oxford, England), 2023-01, Vol.39 (1)

2023

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Influence of Cucurbiturils on the Production of Reactive Oxygen Species by T- and B-Lymphocytes, Platelets and Red Blood Cells

DRUMMER—rapid detection of RNA modifications through comparative nanopore sequencing

GNN-based embedding for clustering scRNA-seq data

Graph attention network for link prediction of gene regulations from single-cell RNA-sequencing data

XGBLC: an improved survival prediction model based on XGBoost

CellVGAE: an unsupervised scRNA-seq analysis workflow with graph attention networks

E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants

A convolutional neural network and graph convolutional network-based method for predicting the classification of anatomical therapeutic chemicals

MARSY: a multitask deep-learning framework for prediction of drug combination synergy scores

WMSA: a novel method for multiple sequence alignment of DNA sequences

LncLocFormer: a Transformer-based deep learning model for multi-label lncRNA subcellular localization prediction by using localization-specific attention mechanism

Deep single-cell RNA-seq data clustering with graph prototypical contrastive learning

DeepMicroGen: a generative adversarial network-based method for longitudinal microbiome data imputation

blitzGSEA: efficient computation of gene set enrichment analysis through gamma distribution approximation

scKWARN: Kernel-weighted-average robust normalization for single-cell RNA-seq data

The adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell data

nf-core/nanostring: a pipeline for reproducible NanoString nCounter analysis

HGC: fast hierarchical clustering for large-scale single-cell data

spatialGE: quantification and visualization of the tumor microenvironment heterogeneity using spatial transcriptomics

Inference of 3D genome architecture by modeling overdispersion of Hi-C data

Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data

TsImpute: an accurate two-step imputation method for single-cell RNA-seq data

RNAget: an API to securely retrieve RNA quantifications

scSemiGAN: a single-cell semi-supervised annotation and dimensionality reduction framework based on generative adversarial network

PoDCall: positive droplet calling and normalization of droplet digital PCR DNA methylation data

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