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Towards a genomics-informed, real-time, global pathogen surveillance system

Nature reviews. Genetics, 2018, Vol.19 (1), p.9-20

2018

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Poretools: a toolkit for analyzing nanopore sequence data

Bioinformatics, 2014-12, Vol.30 (23), p.3399-3401

2014

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Binning metagenomic contigs by coverage and composition

Nature methods, 2014-11, Vol.11 (11), p.1144-1146

2014

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Identification of novel imidazo[1,2-a]pyridine inhibitors targeting M. tuberculosis QcrB

PloS one, 2012-12, Vol.7 (12), p.e52951-e52951

2012

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Cohort patterns in Rana tadpole metamorphosis

Journal of zoology (1987), 2016-12, Vol.300 (4), p.314-323

Loman, J.

2016

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Extreme genetic fragility of the HIV-1 capsid

PLoS pathogens, 2013-06, Vol.9 (6), p.e1003461-e1003461

2013

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Defining bacterial species in the genomic era: insights from the genus Acinetobacter

BMC microbiology, 2012-12, Vol.12 (1), p.302-302, Article 302

2012

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High-throughput sequencing and clinical microbiology: progress, opportunities and challenges

Current opinion in microbiology, 2010-10, Vol.13 (5), p.625-631

2010

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Differences in the gut microbiota between Gurkhas and soldiers of British origin

PloS one, 2023-12, Vol.18 (12), p.e0292645-e0292645

2023

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High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak

The Journal of hospital infection, 2010-05, Vol.75 (1), p.37-41

2010

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Molecular and genomic investigation of an urban outbreak of dengue virus serotype 2 in Angola, 2017-2019

PLoS neglected tropical diseases, 2022-05, Vol.16 (5), p.e0010255

2022

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Primary and secondary phenology. Does it pay a frog to spawn early

Journal of zoology (1987), 2009-09, Vol.279 (1), p.64-70

Loman, J

2009

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Mycobacterial dihydrofolate reductase inhibitors identified using chemogenomic methods and in vitro validation

PloS one, 2015-03, Vol.10 (3), p.e0121492-e0121492

2015

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Biochemical and structural characterization of mycobacterial aspartyl-tRNA synthetase AspS, a promising TB drug target

PloS one, 2014-11, Vol.9 (11), p.e113568-e113568

2014

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Ultra-deep, long-read nanopore sequencing of mock microbial community standards

Gigascience, 2019-05, Vol.8 (5)

2019

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Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

BMC biology, 2014-11, Vol.12 (1), p.87-87, Article 87

2014

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Genome analysis of a highly virulent serotype 1 strain of Streptococcus pneumoniae from West Africa

PloS one, 2012-10, Vol.7 (10), p.e26742-e26742

2012

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A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer

Gigascience, 2014-10, Vol.3 (1), p.22-22, Article 22

2014

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Clonal expansion within pneumococcal serotype 6C after use of seven-valent vaccine

PloS one, 2013-05, Vol.8 (5), p.e64731-e64731

2013

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Calculating orthologs in bacteria and Archaea: a divide and conquer approach

PloS one, 2011-12, Vol.6 (12), p.e28388-e28388

2011

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Microbial TIR domains: not necessarily agents of subversion?

Trends in microbiology (Regular ed.), 2009-09, Vol.17 (9), p.393-398

2009

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Epidemiological investigation of Pseudomonas aeruginosa isolates from a six-year-long hospital outbreak using high-throughput whole genome sequencing

Euro surveillance : bulletin européen sur les maladies transmissibles, 2013-10, Vol.18 (42), p.1

2013

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The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats

PLoS genetics, 2009-03, Vol.5 (3), p.e1000416-e1000416

2009

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Towards a genomics-informed, real-time, global pathogen surveillance system

Poretools: a toolkit for analyzing nanopore sequence data

Binning metagenomic contigs by coverage and composition

Identification of novel imidazo[1,2-a]pyridine inhibitors targeting M. tuberculosis QcrB

Cohort patterns in Rana tadpole metamorphosis

Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States

Extreme genetic fragility of the HIV-1 capsid

Defining bacterial species in the genomic era: insights from the genus Acinetobacter

Tetrahydropyrazolo[1,5-a]pyrimidine-3-carboxamide and N-benzyl-6',7'-dihydrospiro[piperidine-4,4'-thieno[3,2-c]pyran] analogues with bactericidal efficacy against Mycobacterium tuberculosis targeting MmpL3

High-throughput sequencing and clinical microbiology: progress, opportunities and challenges

Differences in the gut microbiota between Gurkhas and soldiers of British origin

High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak

Molecular and genomic investigation of an urban outbreak of dengue virus serotype 2 in Angola, 2017-2019

Primary and secondary phenology. Does it pay a frog to spawn early

Mycobacterial dihydrofolate reductase inhibitors identified using chemogenomic methods and in vitro validation

Biochemical and structural characterization of mycobacterial aspartyl-tRNA synthetase AspS, a promising TB drug target

Ultra-deep, long-read nanopore sequencing of mock microbial community standards

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

Genome analysis of a highly virulent serotype 1 strain of Streptococcus pneumoniae from West Africa

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer

Clonal expansion within pneumococcal serotype 6C after use of seven-valent vaccine

Calculating orthologs in bacteria and Archaea: a divide and conquer approach

Microbial TIR domains: not necessarily agents of subversion?

Epidemiological investigation of Pseudomonas aeruginosa isolates from a six-year-long hospital outbreak using high-throughput whole genome sequencing

The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats

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