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Gaussian-input Gaussian mixture model for representing density maps and atomic models

Journal of structural biology, 2018-07, Vol.203 (1), p.1-16

Kawabata, Takeshi

2018

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Current knowledge on enzymatic PET degradation and its possible application to waste stream management and other fields

Applied microbiology and biotechnology, 2019-06, Vol.103 (11), p.4253-4268

2019

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Mutational analysis of cutinase-like enzyme, Cut190, based on the 3D docking structure with model compounds of polyethylene terephthalate

Journal of bioscience and bioengineering, 2017-07, Vol.124 (1), p.28-35

2017

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Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data

Protein science, 2022-01, Vol.31 (1), p.173-186

2022

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Omokage search: shape similarity search service for biomolecular structures in both the PDB and EMDB

Bioinformatics, 2016-02, Vol.32 (4), p.619-620

2016

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Difference of binding modes among three ligands to a receptor mSin3B corresponding to their inhibitory activities

Scientific reports, 2021-03, Vol.11 (1), p.6178-6178, Article 6178

2021

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Biochemical and genetic analysis of a cutinase-type polyesterase from a thermophilic Thermobifida alba AHK119

Applied microbiology and biotechnology, 2012-07, Vol.95 (2), p.419-430

2012

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New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)

Protein science, 2018-01, Vol.27 (1), p.95-102

2018

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Comparison of genetic structures and biochemical properties of tandem cutinase-type polyesterases from Thermobifida alba AHK119

Journal of bioscience and bioengineering, 2015-11, Vol.120 (5), p.491-497

2015

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Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex Using a Gaussian Mixture Model

Biophysical journal, 2008-11, Vol.95 (10), p.4643-4658

Kawabata, Takeshi

2008

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Functional characterization of rare NRXN1 variants identified in autism spectrum disorders and schizophrenia

Journal of neurodevelopmental disorders, 2020-09, Vol.12 (1), p.25-25, Article 25

2020

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Catalytic mechanism of short ethoxy chain nonylphenol dehydrogenase belonging to a polyethylene glycol dehydrogenase group in the GMC oxidoreductase family

International journal of molecular sciences, 2013-01, Vol.14 (1), p.1218-1231

2013

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Engineered polyethylene terephthalate hydrolases: perspectives and limits

Applied microbiology and biotechnology, 2024-12, Vol.108 (1), p.404, Article 404

2024

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Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex using Gaussian Mixture Model

Biophysical journal, 2013-01, Vol.104 (2), p.352a-352a

Kawabata, Takeshi

2013

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Novel types of two-domain multi-copper oxidases: possible missing links in the evolution

FEBS letters, 2003-10, Vol.553 (3), p.239-244

2003

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Effect of ternary additions on mechanical properties of TiAl

Acta materialia, 1998-03, Vol.46 (6), p.2185-2194

1998

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Omokage Search and Gmfit: Shape Similarity Search and Superposition among Models and Maps

Biophysical journal, 2016-02, Vol.110 (3), p.157a-157a

2016

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Homcos : A Server to Search and Model 3D Structures of Protein-Protein and Compound-Protein Complexes

Biophysical journal, 2014-01, Vol.106 (2), p.207a-207a

2014

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Mechanical properties of TiNbTa single crystals at cryogenic temperatures

Acta materialia, 1998-05, Vol.46 (8), p.2705-2715

1998

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Effect of electron temperature on the DLC film properties

Surface & coatings technology, 2005-06, Vol.196 (1), p.226-230

2005

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HOMCOS: a server to predict interacting protein pairs and interacting sites by homology modeling of complex structures

Nucleic acids research, 2008-07, Vol.36 (Web Server issue), p.W185

2008

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Application of human thermal load into unsteady condition for improvement of outdoor thermal comfort

Building and environment, 2011-08, Vol.46 (8), p.1716-1724

2011

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A Comparison of 3D Conformations of Endothelin-1 Analogs to Find the Pharmacophore Model Required for Endothelin Receptor Ligand Activity

Biophysical journal, 2014-01, Vol.106 (2), p.479a-479a

2014

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Finding evolutionary relations beyond superfamilies: Fold‐based superfamilies

Protein science, 2003-10, Vol.12 (10), p.2239-2251

2003

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Structural/functional assignment of unknown bacteriophage T4 proteins by iterative database searches

Gene, 2000-12, Vol.259 (1-2), p.223-233

2000

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Gaussian-input Gaussian mixture model for representing density maps and atomic models

Current knowledge on enzymatic PET degradation and its possible application to waste stream management and other fields

Mutational analysis of cutinase-like enzyme, Cut190, based on the 3D docking structure with model compounds of polyethylene terephthalate

Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data

Omokage search: shape similarity search service for biomolecular structures in both the PDB and EMDB

Difference of binding modes among three ligands to a receptor mSin3B corresponding to their inhibitory activities

Biochemical and genetic analysis of a cutinase-type polyesterase from a thermophilic Thermobifida alba AHK119

New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)

Comparison of genetic structures and biochemical properties of tandem cutinase-type polyesterases from Thermobifida alba AHK119

Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex Using a Gaussian Mixture Model

Functional characterization of rare NRXN1 variants identified in autism spectrum disorders and schizophrenia

Catalytic mechanism of short ethoxy chain nonylphenol dehydrogenase belonging to a polyethylene glycol dehydrogenase group in the GMC oxidoreductase family

Engineered polyethylene terephthalate hydrolases: perspectives and limits

Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex using Gaussian Mixture Model

Novel types of two-domain multi-copper oxidases: possible missing links in the evolution

Effect of ternary additions on mechanical properties of TiAl

Omokage Search and Gmfit: Shape Similarity Search and Superposition among Models and Maps

Homcos : A Server to Search and Model 3D Structures of Protein-Protein and Compound-Protein Complexes

Mechanical properties of TiNbTa single crystals at cryogenic temperatures

Effect of electron temperature on the DLC film properties

HOMCOS: a server to predict interacting protein pairs and interacting sites by homology modeling of complex structures

Application of human thermal load into unsteady condition for improvement of outdoor thermal comfort

A Comparison of 3D Conformations of Endothelin-1 Analogs to Find the Pharmacophore Model Required for Endothelin Receptor Ligand Activity

Finding evolutionary relations beyond superfamilies: Fold‐based superfamilies

Structural/functional assignment of unknown bacteriophage T4 proteins by iterative database searches

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