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Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters

Microbiome, 2019-02, Vol.7 (1), p.35-9, Article 35

2019

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Biodiversity of Environmental Leptospira : Improving Identification and Revisiting the Diagnosis

Frontiers in microbiology, 2018-05, Vol.9, p.816-816

2018

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Leptospira venezuelensis sp. nov., a new member of the intermediate group isolated from rodents, cattle and humans

International journal of systematic and evolutionary microbiology, 2018-02, Vol.68 (2), p.513-517

2018

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Pathogenomics of Emerging Campylobacter Species

Clinical microbiology reviews, 2019-09, Vol.32 (4)

2019

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An antibiotic produced by Pseudomonas fluorescens CFBP2392 with antifungal activity against Rhizoctonia solani

Frontiers in microbiology, 2023-11, Vol.14, p.1286926-1286926

2023

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Protocol for post-processing of bacterial pangenome data using Pagoo pipeline

STAR protocols, 2021-12, Vol.2 (4), p.100802-100802, Article 100802

2021

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Pangenome analysis reveals genetic isolation in Campylobacter hyointestinalis subspecies adapted to different mammalian hosts

Scientific reports, 2021-02, Vol.11 (1), p.3431-3431, Article 3431

2021

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MLSTar: automatic multilocus sequence typing of bacterial genomes in R

PeerJ (San Francisco, CA), 2018-06, Vol.6, p.e5098-e5098, Article e5098

2018

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Campylobacter geochelonis sp. nov. isolated from the western Hermann's tortoise (Testudo hermanni hermanni)

International journal of systematic and evolutionary microbiology, 2016-09, Vol.66 (9), p.3468-3476

2016

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Phylogenetic and genome-wide deep-sequencing analyses of canine parvovirus reveal co-infection with field variants and emergence of a recent recombinant strain

PloS one, 2014-11, Vol.9 (11), p.e111779-e111779

2014

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The fecal, oral, and skin microbiota of children with Chagas disease treated with benznidazole

PloS one, 2019-02, Vol.14 (2), p.e0212593-e0212593

2019

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Deciphering the unexplored Leptospira diversity from soils uncovers genomic evolution to virulence

Microbial genomics, 2018-01, Vol.4 (1)

2018

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A Two-Time Point Analysis of Gut Microbiota in the General Population of Buenos Aires and Its Variation Due to Preventive and Compulsory Social Isolation During the COVID-19 Pandemic

Frontiers in microbiology, 2022-03, Vol.13, p.803121

2022

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Distinct Campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota

Nature communications, 2017-11, Vol.8 (1), p.1367-8, Article 1367

2017

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Human microbiota drives hospital-associated antimicrobial resistance dissemination in the urban environment and mirrors patient case rates

Microbiome, 2022-12, Vol.10 (1), p.208-208, Article 208

2022

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Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

BMC genomics, 2018-01, Vol.19 (1), p.2-2, Article 2

2018

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Gut feeling: building a picture of Latin American microbiomes

Nature (London), 2022-02, Vol.602 (7898), p.718-718

Leeming, Jack

2022

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Correction: The fecal, oral, and skin microbiota of children with Chagas disease treated with benznidazole

PloS one, 2019-04, Vol.14 (4), p.e0215199-e0215199

2019

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First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America

Journal of global antimicrobial resistance., 2022-09, Vol.30, p.480-484

2022

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Genetically divergent Francisella philomiragia associated with septic arthritis, Montevideo, Uruguay

New microbes and new infections, 2024-03, Vol.57, p.101210-101210, Article 101210

2024

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Assessing the intra-species genetic variability in the clonal pathogen Campylobacter fetus: CRISPRs are highly polymorphic DNA markers

Journal of microbiological methods, 2017-01, Vol.132, p.86-94

2017

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Reduced set of virulence genes allows high accuracy prediction of bacterial pathogenicity in humans

PloS one, 2012-08, Vol.7 (8), p.e42144-e42144

2012

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Phylen: automatic phylogenetic reconstruction using the EggNOG database

Journal of open source software, 2018-05, Vol.3 (25), p.593

2018

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Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters

Biodiversity of Environmental Leptospira : Improving Identification and Revisiting the Diagnosis

Leptospira venezuelensis sp. nov., a new member of the intermediate group isolated from rodents, cattle and humans

Pathogenomics of Emerging Campylobacter Species

An antibiotic produced by Pseudomonas fluorescens CFBP2392 with antifungal activity against Rhizoctonia solani

Protocol for post-processing of bacterial pangenome data using Pagoo pipeline

Pangenome analysis reveals genetic isolation in Campylobacter hyointestinalis subspecies adapted to different mammalian hosts

MLSTar: automatic multilocus sequence typing of bacterial genomes in R

Campylobacter geochelonis sp. nov. isolated from the western Hermann's tortoise (Testudo hermanni hermanni)

Phylogenetic and genome-wide deep-sequencing analyses of canine parvovirus reveal co-infection with field variants and emergence of a recent recombinant strain

The fecal, oral, and skin microbiota of children with Chagas disease treated with benznidazole

Deciphering the unexplored Leptospira diversity from soils uncovers genomic evolution to virulence

A Two-Time Point Analysis of Gut Microbiota in the General Population of Buenos Aires and Its Variation Due to Preventive and Compulsory Social Isolation During the COVID-19 Pandemic

Distinct Campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota

Real-Time Genomic Surveillance for SARS-CoV-2 Variants of Concern, Uruguay

Human microbiota drives hospital-associated antimicrobial resistance dissemination in the urban environment and mirrors patient case rates

Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association

Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Gut feeling: building a picture of Latin American microbiomes

Correction: The fecal, oral, and skin microbiota of children with Chagas disease treated with benznidazole

First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America

Genetically divergent Francisella philomiragia associated with septic arthritis, Montevideo, Uruguay

Assessing the intra-species genetic variability in the clonal pathogen Campylobacter fetus: CRISPRs are highly polymorphic DNA markers

Reduced set of virulence genes allows high accuracy prediction of bacterial pathogenicity in humans

Phylen: automatic phylogenetic reconstruction using the EggNOG database

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