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Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis

Molecular biology and evolution, 2012-08, Vol.29 (8), p.1917-1932

2012

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Maximum Likelihood Estimation of a Migration Matrix and Effective Population Sizes in n Subpopulations by Using a Coalescent Approach

Proceedings of the National Academy of Sciences - PNAS, 2001-04, Vol.98 (8), p.4563-4568

2001

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Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies

Systematic biology, 2015-11, Vol.64 (6), p.1032-1047

2015

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The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection

PLoS genetics, 2012-04, Vol.8 (4), p.e1002660-e1002660

2012

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An Alternating Least Squares Approach to Inferring Phylogenies from Pairwise Distances

Systematic biology, 1997-03, Vol.46 (1), p.101-111

1997

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Maximum Likelihood Estimation of Population Growth Rates Based on the Coalescent

Genetics (Austin), 1998-05, Vol.149 (1), p.429-434

1998

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Covariation of gene frequencies in a stepping-stone lattice of populations

Theoretical population biology, 2015-03, Vol.100, p.88-97

Felsenstein, Joseph

2015

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Covariation of gene frequencies in a stepping-stone lattice of populations1

Theoretical population biology, 2014-12, Vol.100C, p.88-97

Felsenstein, Joseph

2014

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[24] Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods

Methods in Enzymology, 1996, Vol.266, p.418-427

Felsenstein, Joseph

1996

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Evolutionary trees from DNA sequences: a maximum likelihood approach

Journal of molecular evolution, 1981-01, Vol.17 (6), p.368-376

Felsenstein, J

1981

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An evolutionary model for maximum likelihood alignment of DNA sequences

Journal of molecular evolution, 1991-08, Vol.33 (2), p.114-124

1991

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A Two-Stage Pruning Algorithm for Likelihood Computation for a Population Tree

Genetics (Austin), 2008-10, Vol.180 (2), p.1095-1105

2008

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Estimators of the Human Effective Sex Ratio Detect Sex Biases on Different Timescales

American journal of human genetics, 2010-12, Vol.87 (6), p.848-856

2010

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A Hidden Markov Model approach to variation among sites in rate of evolution

Molecular biology and evolution, 1996-01, Vol.13 (1), p.93-104

1996

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Confidence Limits on Phylogenies: An Approach Using the Bootstrap

Evolution, 1985-07, Vol.39 (4), p.783-791

Felsenstein, Joseph

1985

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The Troubled Growth of Statistical Phylogenetics

Systematic biology, 2001-08, Vol.50 (4), p.465-467

Felsenstein, Joseph

2001

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THE EVOLUTIONARY ADVANTAGE OF RECOMBINATION

Genetics (Austin), 1974-10, Vol.78 (2), p.737-756

Felsenstein, Joseph

1974

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A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates

Molecular biology and evolution, 1994-05, Vol.11 (3), p.459-468

1994

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Estimating Effective Population Size and Mutation Rate From Sequence Data Using Metropolis-Hastings Sampling

Genetics (Austin), 1995-08, Vol.140 (4), p.1421-1430

1995

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Phylogenies and the Comparative Method

The American naturalist, 1985-01, Vol.125 (1), p.1-15

Felsenstein, Joseph

1985

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Modeling the Site-Specific Variation of Selection Patterns along Lineages

Proceedings of the National Academy of Sciences - PNAS, 2004-08, Vol.101 (35), p.12957-12962

2004

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Is there Something Wrong with the Bootstrap on Phylogenies? A Reply to Hillis and Bull

Systematic biology, 1993-06, Vol.42 (2), p.193-200

1993

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Phylogenies from Restriction Sites: A Maximum-Likelihood Approach

Evolution, 1992-02, Vol.46 (1), p.159-173

Felsenstein, Joseph

1992

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Skepticism Towards Santa Rosalia, or Why are There so Few Kinds of Animals?

Evolution, 1981-01, Vol.35 (1), p.124-138

Felsenstein, Joseph

1981

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The Statistical Approach to Inferring Evolutionary Trees and What It Tells Us About Parsimony and Compatibility

Cladistics: Perspectives on the Reconstruction of Evolutionary History, 2019, p.169-191

646.32, 2019

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Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis

Maximum Likelihood Estimation of a Migration Matrix and Effective Population Sizes in n Subpopulations by Using a Coalescent Approach

Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies

The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection

An Alternating Least Squares Approach to Inferring Phylogenies from Pairwise Distances

Maximum Likelihood Estimation of Population Growth Rates Based on the Coalescent

Covariation of gene frequencies in a stepping-stone lattice of populations

Covariation of gene frequencies in a stepping-stone lattice of populations1

[24] Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods

Evolutionary trees from DNA sequences: a maximum likelihood approach

An evolutionary model for maximum likelihood alignment of DNA sequences

A Two-Stage Pruning Algorithm for Likelihood Computation for a Population Tree

Estimators of the Human Effective Sex Ratio Detect Sex Biases on Different Timescales

A Hidden Markov Model approach to variation among sites in rate of evolution

Confidence Limits on Phylogenies: An Approach Using the Bootstrap

The Troubled Growth of Statistical Phylogenetics

THE EVOLUTIONARY ADVANTAGE OF RECOMBINATION

A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates

Estimating Effective Population Size and Mutation Rate From Sequence Data Using Metropolis-Hastings Sampling

Phylogenies and the Comparative Method

Modeling the Site-Specific Variation of Selection Patterns along Lineages

Is there Something Wrong with the Bootstrap on Phylogenies? A Reply to Hillis and Bull

Phylogenies from Restriction Sites: A Maximum-Likelihood Approach

Skepticism Towards Santa Rosalia, or Why are There so Few Kinds of Animals?

The Statistical Approach to Inferring Evolutionary Trees and What It Tells Us About Parsimony and Compatibility

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