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Bayesian phylogenetics with BEAUti and the BEAST 1.7

Molecular biology and evolution, 2012-08, Vol.29 (8), p.1969-1973

2012

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Bayesian Inference of Species Networks from Multilocus Sequence Data

Molecular biology and evolution, 2018-02, Vol.35 (2), p.504-517

2018

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Improving the performance of Bayesian phylogenetic inference under relaxed clock models

BMC ecology and evolution, 2020-05, Vol.20 (1), p.1, Article 54

2020

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Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data

Molecular biology and evolution, 2016-08, Vol.33 (8), p.2102-2116

2016

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Accounting for Errors in Data Improves Divergence Time Estimates in Single-cell Cancer Evolution

Molecular biology and evolution, 2022-08, Vol.39 (8)

2022

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Estimating Epidemic Incidence and Prevalence from Genomic Data

Molecular biology and evolution, 2019-08, Vol.36 (8), p.1804-1816

2019

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Inferring Ancestral Recombination Graphs from Bacterial Genomic Data

Genetics (Austin), 2017-02, Vol.205 (2), p.857-870

2017

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Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic models

Genetics (Austin), 2015-02, Vol.199 (2), p.595-607

2015

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mtDNA Variation Predicts Population Size in Humans and Reveals a Major Southern Asian Chapter in Human Prehistory

Molecular biology and evolution, 2008-02, Vol.25 (2), p.468-474

2008

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Time dependency of molecular rate estimates and systematic overestimation of recent divergence times

Molecular biology and evolution, 2005-07, Vol.22 (7), p.1561-1568

2005

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Estimating the Basic Reproductive Number from Viral Sequence Data

Molecular biology and evolution, 2012, Vol.29 (1), p.347-357

2012

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Measurably evolving populations

Trends in ecology & evolution (Amsterdam), 2003-09, Vol.18 (9), p.481-488

2003

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Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) using a multigene approach; the effect of data partitioning on resolving phylogenies in a Bayesian framework

Molecular phylogenetics and evolution, 2005-11, Vol.37 (2), p.426-441

2005

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Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1

BMC evolutionary biology, 2006-03, Vol.6 (1), p.28, Article 28

2006

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Reconstructing genealogies of serial samples under the assumption of a molecular clock using serial-sample UPGMA

Molecular biology and evolution, 2000-12, Vol.17 (12), p.1807-1815

2000

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Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model

Algorithms in Bioinformatics, p.228-244

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Report of the 14th Genomic Standards Consortium Meeting, Oxford, UK, September 17-21, 2012

Standards in genomic sciences, 2014-06, Vol.9 (3), p.1236-1250

2014

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The Cancer Genome Atlas Pan-Cancer analysis project

Nature genetics, 2013-10, Vol.45 (10), p.1113-1120

2013

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Bayesian phylogenetics with BEAUti and the BEAST 1.7

Bayesian Inference of Species Networks from Multilocus Sequence Data

Improving the performance of Bayesian phylogenetic inference under relaxed clock models

Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data

Accounting for Errors in Data Improves Divergence Time Estimates in Single-cell Cancer Evolution

Estimating Epidemic Incidence and Prevalence from Genomic Data

Inferring Ancestral Recombination Graphs from Bacterial Genomic Data

Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic models

mtDNA Variation Predicts Population Size in Humans and Reveals a Major Southern Asian Chapter in Human Prehistory

Time dependency of molecular rate estimates and systematic overestimation of recent divergence times

Estimating the Basic Reproductive Number from Viral Sequence Data

Measurably evolving populations

Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) using a multigene approach; the effect of data partitioning on resolving phylogenies in a Bayesian framework

Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1

Reconstructing genealogies of serial samples under the assumption of a molecular clock using serial-sample UPGMA

Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model

Report of the 14th Genomic Standards Consortium Meeting, Oxford, UK, September 17-21, 2012

The Cancer Genome Atlas Pan-Cancer analysis project

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