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Proteome Discoverer-A Community Enhanced Data Processing Suite for Protein Informatics

Proteomes, 2021-03, Vol.9 (1), p.15

Orsburn, Benjamin C

2021

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Insights into protein post-translational modification landscapes of individual human cells by trapped ion mobility time-of-flight mass spectrometry

Nature communications, 2022-11, Vol.13 (1), p.7246-14, Article 7246

2022

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Evaluation of the Sensitivity of Proteomics Methods Using the Absolute Copy Number of Proteins in a Single Cell as a Metric

Proteomes, 2021-07, Vol.9 (3), p.34

Orsburn, Benjamin C

2021

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Host Plants Indirectly Influence Plant Virus Transmission by Altering Gut Cysteine Protease Activity of Aphid Vectors

Molecular & cellular proteomics, 2017-04, Vol.16 (4), p.S230-S243

2017

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Beyond the model organism—Mechanistic analysis of protein post‐translational modifications is ready for all challengers

Proteomics (Weinheim), 2024-03, Vol.24 (5), p.e2300314-n/a

Orsburn, Benjamin C.

2024

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Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRASG12D Inhibitor MRTX1133

Journal of proteome research, 2023-11, Vol.22 (12), p.3703-3713

Orsburn, Benjamin C

2023

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The Carrier Proteome Should Be Reassessed for Each Mass Analyzer Architecture

Journal of the American Society for Mass Spectrometry, 2024-08, Vol.35 (8), p.1644-1646

Orsburn, Benjamin C.

2024

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Time-of-Flight Fragmentation Spectra Generated by the Proteomic Analysis of Single Human Cells Do Not Exhibit Atypical Fragmentation Patterns

Journal of proteome research, 2023-03, Vol.22 (3), p.1003-1008

Orsburn, Benjamin C.

2023

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Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRAS G12D Inhibitor MRTX1133

Journal of proteome research, 2023-12, Vol.22 (12), p.3703-3713

Orsburn, Benjamin C

2023

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The Open Pesticide Transition Library (oPestTL)

Journal of the American Society for Mass Spectrometry, 2022-10, Vol.33 (10), p.1813-1815

Orsburn, Benjamin C.

2022

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Cloud Computing Based Immunopeptidomics Utilizing Community Curated Variant Libraries Simplifies and Improves Neo-Antigen Discovery in Metastatic Melanoma

Cancers, 2021-07, Vol.13 (15), p.3754

2021

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Cocaine regulates antiretroviral therapy CNS access through pregnane-x receptor-mediated drug transporter and metabolizing enzyme modulation at the blood brain barrier

Fluids and barriers of the CNS, 2024-01, Vol.21 (1), p.5-5, Article 5

2024

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Simple Tool for Rapidly Assessing the Quality of Multiplexed Single Cell Proteomics Data

Journal of the American Society for Mass Spectrometry, 2023-12, Vol.34 (12), p.2615-2619

2023

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Chorioamnionitis disrupts erythropoietin and melatonin homeostasis through the placental-fetal-brain axis during critical developmental periods

Frontiers in physiology, 2023-07, Vol.14, p.1201699

2023

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Standard Flow Multiplexed Proteomics (SFloMPro)-An Accessible Alternative to NanoFlow Based Shotgun Proteomics

Proteomes, 2022-01, Vol.10 (1), p.3

2022

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Analyzing Posttranslational Modifications in Single Cells

Methods in molecular biology (Clifton, N.J.), 2024, Vol.2817, p.145

Orsburn, Benjamin C

2024

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Visual Mass-Spec Share (vMS-Share): A New Public Web-Based Mass Spectrometry Visualization and Data Mining Repository

Journal of proteomics & bioinformatics, 2019, Vol.12 (2)

2019

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IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts

Proceedings of the National Academy of Sciences - PNAS, 2018-05, Vol.115 (21), p.E4767-E4776

2018

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Sialylated keratan sulfates on MUC5B are Siglec-8 ligands in the human esophagus

Glycobiology (Oxford), 2024-08, Vol.34 (10)

2024

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Achieving a Deeper Understanding of Drug Metabolism and Responses Using Single-Cell Technologies

Drug metabolism and disposition, 2023-03, Vol.51 (3), p.350-359

2023

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Spatial Heterogeneity of Brain Lipids in SIV-Infected Macaques Treated with Antiretroviral Therapy

Journal of the American Society for Mass Spectrometry, 2024-02, Vol.35 (2), p.185-196

2024

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The Human Ganglioside Interactome in Live Cells Revealed Using Clickable Photoaffinity Ganglioside Probes

Journal of the American Chemical Society, 2024-07, Vol.146 (26), p.17801-17816

2024

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Comparative proteomics of a model MCF10A-KRasG12V cell line reveals a distinct molecular signature of the KRasG12V cell surface

Oncotarget, 2016-12, Vol.7 (52), p.86948-86971

2016

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The SAGA HAT module is tethered by its SWIRM domain and modulates activity of the SAGA DUB module

Biochimica et biophysica acta. Gene regulatory mechanisms, 2023-06, Vol.1866 (2), p.194929-194929, Article 194929

2023

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Proteome Discoverer-A Community Enhanced Data Processing Suite for Protein Informatics

Insights into protein post-translational modification landscapes of individual human cells by trapped ion mobility time-of-flight mass spectrometry

Evaluation of the Sensitivity of Proteomics Methods Using the Absolute Copy Number of Proteins in a Single Cell as a Metric

Host Plants Indirectly Influence Plant Virus Transmission by Altering Gut Cysteine Protease Activity of Aphid Vectors

Beyond the model organism—Mechanistic analysis of protein post‐translational modifications is ready for all challengers

Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRASG12D Inhibitor MRTX1133

The Carrier Proteome Should Be Reassessed for Each Mass Analyzer Architecture

Time-of-Flight Fragmentation Spectra Generated by the Proteomic Analysis of Single Human Cells Do Not Exhibit Atypical Fragmentation Patterns

Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRAS G12D Inhibitor MRTX1133

The Open Pesticide Transition Library (oPestTL)

Cloud Computing Based Immunopeptidomics Utilizing Community Curated Variant Libraries Simplifies and Improves Neo-Antigen Discovery in Metastatic Melanoma

Cocaine regulates antiretroviral therapy CNS access through pregnane-x receptor-mediated drug transporter and metabolizing enzyme modulation at the blood brain barrier

Simple Tool for Rapidly Assessing the Quality of Multiplexed Single Cell Proteomics Data

Chorioamnionitis disrupts erythropoietin and melatonin homeostasis through the placental-fetal-brain axis during critical developmental periods

Standard Flow Multiplexed Proteomics (SFloMPro)-An Accessible Alternative to NanoFlow Based Shotgun Proteomics

Reinspection of a Clinical Proteomics Tumor Analysis Consortium (CPTAC) Dataset with Cloud Computing Reveals Abundant Post-Translational Modifications and Protein Sequence Variants

Analyzing Posttranslational Modifications in Single Cells

Visual Mass-Spec Share (vMS-Share): A New Public Web-Based Mass Spectrometry Visualization and Data Mining Repository

IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts

Sialylated keratan sulfates on MUC5B are Siglec-8 ligands in the human esophagus

Achieving a Deeper Understanding of Drug Metabolism and Responses Using Single-Cell Technologies

Spatial Heterogeneity of Brain Lipids in SIV-Infected Macaques Treated with Antiretroviral Therapy

The Human Ganglioside Interactome in Live Cells Revealed Using Clickable Photoaffinity Ganglioside Probes

Comparative proteomics of a model MCF10A-KRasG12V cell line reveals a distinct molecular signature of the KRasG12V cell surface

The SAGA HAT module is tethered by its SWIRM domain and modulates activity of the SAGA DUB module

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