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A Comparative Method for Both Discrete and Continuous Characters Using the Threshold Model

The American naturalist, 2012-02, Vol.179 (2), p.145-156

2012

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Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis

Molecular biology and evolution, 2012-08, Vol.29 (8), p.1917-1932

2012

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Using the quantitative genetic threshold model for inferences between and within species

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2005-07, Vol.360 (1459), p.1427-1434

Felsenstein, Joseph

2005

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Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies

Systematic biology, 2015-11, Vol.64 (6), p.1032-1047

2015

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The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection

PLoS genetics, 2012-04, Vol.8 (4), p.e1002660-e1002660

2012

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Controlling for non-independence in comparative analysis of patterns across populations within species

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2011-05, Vol.366 (1569), p.1410-1424

2011

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An Alternating Least Squares Approach to Inferring Phylogenies from Pairwise Distances

Systematic biology, 1997-03, Vol.46 (1), p.101-111

1997

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Comparative Methods with Sampling Error and Within‐Species Variation: Contrasts Revisited and Revised

The American naturalist, 2008-06, Vol.171 (6), p.713-725

2008

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Maximum Likelihood Estimation of Population Growth Rates Based on the Coalescent

Genetics (Austin), 1998-05, Vol.149 (1), p.429-434

1998

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Covariation of gene frequencies in a stepping-stone lattice of populations

Theoretical population biology, 2015-03, Vol.100, p.88-97

Felsenstein, Joseph

2015

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Usefulness of Single Nucleotide Polymorphism Data for Estimating Population Parameters

Genetics (Austin), 2000-09, Vol.156 (1), p.439-447

2000

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Covariation of gene frequencies in a stepping-stone lattice of populations1

Theoretical population biology, 2014-12, Vol.100C, p.88-97

Felsenstein, Joseph

2014

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[24] Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods

Methods in Enzymology, 1996, Vol.266, p.418-427

Felsenstein, Joseph

1996

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Evolutionary trees from DNA sequences: a maximum likelihood approach

Journal of molecular evolution, 1981-01, Vol.17 (6), p.368-376

Felsenstein, J

1981

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Taking variation of evolutionary rates between sites into account in inferring phylogenies

Journal of molecular evolution, 2001-10, Vol.53 (4-5), p.447-455

Felsenstein, J

2001

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An evolutionary model for maximum likelihood alignment of DNA sequences

Journal of molecular evolution, 1991-08, Vol.33 (2), p.114-124

1991

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Luca Cavalli-Sforza and phylogenetic evolutionary methods

Human Population Genetics and Genomics, 2022-08, p.1-11

Joseph, Felsenstein

2022

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A Two-Stage Pruning Algorithm for Likelihood Computation for a Population Tree

Genetics (Austin), 2008-10, Vol.180 (2), p.1095-1105

2008

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Confidence Limits on Phylogenies: An Approach Using the Bootstrap

Evolution, 1985-07, Vol.39 (4), p.783-791

Felsenstein, Joseph

1985

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A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates

Molecular biology and evolution, 1994-05, Vol.11 (3), p.459-468

1994

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Estimating Effective Population Size and Mutation Rate From Sequence Data Using Metropolis-Hastings Sampling

Genetics (Austin), 1995-08, Vol.140 (4), p.1421-1430

1995

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Phylogenies and the Comparative Method

The American naturalist, 1985-01, Vol.125 (1), p.1-15

Felsenstein, Joseph

1985

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How can we infer geography and history from gene frequencies?

Journal of theoretical biology, 1982-05, Vol.96 (1), p.9-20

Felsenstein, Joseph

1982

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Modeling the Site-Specific Variation of Selection Patterns along Lineages

Proceedings of the National Academy of Sciences - PNAS, 2004-08, Vol.101 (35), p.12957-12962

2004

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Is there Something Wrong with the Bootstrap on Phylogenies? A Reply to Hillis and Bull

Systematic biology, 1993-06, Vol.42 (2), p.193-200

1993

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A Comparative Method for Both Discrete and Continuous Characters Using the Threshold Model

Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis

Using the quantitative genetic threshold model for inferences between and within species

Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies

The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection

Controlling for non-independence in comparative analysis of patterns across populations within species

An Alternating Least Squares Approach to Inferring Phylogenies from Pairwise Distances

Comparative Methods with Sampling Error and Within‐Species Variation: Contrasts Revisited and Revised

Maximum Likelihood Estimation of Population Growth Rates Based on the Coalescent

Covariation of gene frequencies in a stepping-stone lattice of populations

Usefulness of Single Nucleotide Polymorphism Data for Estimating Population Parameters

Covariation of gene frequencies in a stepping-stone lattice of populations1

[24] Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods

Evolutionary trees from DNA sequences: a maximum likelihood approach

Taking variation of evolutionary rates between sites into account in inferring phylogenies

An evolutionary model for maximum likelihood alignment of DNA sequences

Luca Cavalli-Sforza and phylogenetic evolutionary methods

A Two-Stage Pruning Algorithm for Likelihood Computation for a Population Tree

Confidence Limits on Phylogenies: An Approach Using the Bootstrap

A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates

Estimating Effective Population Size and Mutation Rate From Sequence Data Using Metropolis-Hastings Sampling

Phylogenies and the Comparative Method

How can we infer geography and history from gene frequencies?

Modeling the Site-Specific Variation of Selection Patterns along Lineages

Is there Something Wrong with the Bootstrap on Phylogenies? A Reply to Hillis and Bull

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