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POInTbrowse: orthology prediction and synteny exploration for paleopolyploid genomes

BMC bioinformatics, 2023-04, Vol.24 (1), p.1-174, Article 174

2023

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Comparative genomics as a time machine: how relative gene dosage and metabolic requirements shaped the time-dependent resolution of yeast polyploidy

Molecular biology and evolution, 2014-12, Vol.31 (12), p.3184-3193

Conant, Gavin C

2014

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GenomeVx: simple web-based creation of editable circular chromosome maps

Bioinformatics, 2008-03, Vol.24 (6), p.861-862

2008

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butterfly plant arms-race escalated by gene and genome duplications

Proceedings of the National Academy of Sciences - PNAS, 2015-07, Vol.112 (27), p.8362-8366

2015

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Gene expression bias between the subgenomes of allopolyploid hybrids is an emergent property of the kinetics of expression

PLoS computational biology, 2024-01, Vol.20 (1), p.e1011803-e1011803

2024

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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization

PLoS genetics, 2018-03, Vol.14 (3), p.e1007267-e1007267

2018

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Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis

The New phytologist, 2012-10, Vol.196 (2), p.596-605

2012

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Convergent evolution of polyploid genomes from across the eukaryotic tree of life

G3 : genes - genomes - genetics, 2022-05, Vol.12 (6)

2022

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Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans

Proceedings of the Royal Society. B, Biological sciences, 2004-01, Vol.271 (1534), p.89-96

2004

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A Single, Shared Triploidy in Three Species of Parasitic Nematodes

G3 : genes - genomes - genetics, 2020-01, Vol.10 (1), p.225-233

2020

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Gene duplication and phenotypic changes in the evolution of mammalian metabolic networks

PloS one, 2014-01, Vol.9 (1), p.e87115

2014

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Hybridization order is not the driving factor behind biases in duplicate gene losses among the hexaploid Solanaceae

Proceedings of the Royal Society. B, Biological sciences, 2022-10, Vol.289 (1985), p.20221810-20221810

2022

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Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time

Current opinion in plant biology, 2014-06, Vol.19, p.91-98

2014

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Functional partitioning of yeast co-expression networks after genome duplication

PLoS biology, 2006-04, Vol.4 (4), p.e109-e109

2006

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Long identical multispecies elements in plant and animal genomes

Proceedings of the National Academy of Sciences - PNAS, 2012-05, Vol.109 (19), p.E1183-E1191

2012

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Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses

Scientific reports, 2018-05, Vol.8 (1), p.7120-1, Article 7120

2018

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Diet shifts provoke complex and variable changes in the metabolic networks of the ruminal microbiome

Microbiome, 2017-06, Vol.5 (1), p.60-60, Article 60

2017

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Distinct C4 sub‐types and C3 bundle sheath isolation in the Paniceae grasses

Plant direct, 2021-12, Vol.5 (12), p.e373-n/a

2021

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Shared single copy genes are generally reliable for inferring phylogenetic relationships among polyploid taxa

Molecular phylogenetics and evolution, 2024-07, Vol.196, p.108087-108087, Article 108087

2024

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Expression level, cellular compartment and metabolic network position all influence the average selective constraint on mammalian enzymes

BMC evolutionary biology, 2011-04, Vol.11, p.89

2011

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Molecular evolution in large genetic networks: does connectivity equal constraint?

Journal of molecular evolution, 2004-02, Vol.58 (2), p.203-211

2004

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POInT: Modeling Polyploidy in the Era of Ubiquitous Genomics

Methods in molecular biology (Clifton, N.J.), 2023, Vol.2545, p.77

Conant, Gavin C

2023

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RUMINNAT NUTRITION SYMPOSIUM: Tiny but mighty: the role of the rumen microbes in livestock production

Journal of animal science, 2018-02, Vol.96 (2), p.752-770

2018

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Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens

BMC genomics, 2008-03, Vol.9 (1), p.147-147, Article 147

2008

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The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity

Nucleic acids research, 2015-11, Vol.43 (20), p.9600

2015

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POInTbrowse: orthology prediction and synteny exploration for paleopolyploid genomes

Comparative genomics as a time machine: how relative gene dosage and metabolic requirements shaped the time-dependent resolution of yeast polyploidy

GenomeVx: simple web-based creation of editable circular chromosome maps

butterfly plant arms-race escalated by gene and genome duplications

Gene expression bias between the subgenomes of allopolyploid hybrids is an emergent property of the kinetics of expression

Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization

Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis

Convergent evolution of polyploid genomes from across the eukaryotic tree of life

Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans

A Single, Shared Triploidy in Three Species of Parasitic Nematodes

Gene duplication and phenotypic changes in the evolution of mammalian metabolic networks

Hybridization order is not the driving factor behind biases in duplicate gene losses among the hexaploid Solanaceae

Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time

Functional partitioning of yeast co-expression networks after genome duplication

Long identical multispecies elements in plant and animal genomes

Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses

Diet shifts provoke complex and variable changes in the metabolic networks of the ruminal microbiome

Distinct C4 sub‐types and C3 bundle sheath isolation in the Paniceae grasses

Shared single copy genes are generally reliable for inferring phylogenetic relationships among polyploid taxa

Expression level, cellular compartment and metabolic network position all influence the average selective constraint on mammalian enzymes

Molecular evolution in large genetic networks: does connectivity equal constraint?

POInT: Modeling Polyploidy in the Era of Ubiquitous Genomics

RUMINNAT NUTRITION SYMPOSIUM: Tiny but mighty: the role of the rumen microbes in livestock production

Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens

The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity

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