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Antimicrobial Resistance in ESKAPE Pathogens

Clinical microbiology reviews, 2020-06, Vol.33 (3)

2020

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GraphSNP: an interactive distance viewer for investigating outbreaks and transmission networks using a graph approach

BMC bioinformatics, 2023-05, Vol.24 (1), p.209-209, Article 209

2023

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The complete genome sequence of Escherichia coli EC958: a high quality reference sequence for the globally disseminated multidrug resistant E. coli O25b:H4-ST131 clone

PloS one, 2014-08, Vol.9 (8), p.e104400-e104400

2014

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Global dissemination of a multidrug resistant Escherichia coli clone

Proceedings of the National Academy of Sciences - PNAS, 2014-04, Vol.111 (15), p.5694-5699

2014

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Predicting nitroimidazole antibiotic resistance mutations in Mycobacterium tuberculosis with protein engineering

PLoS pathogens, 2020-02, Vol.16 (2), p.e1008287-e1008287

2020

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TcrXY is an acid-sensing two-component transcriptional regulator of Mycobacterium tuberculosis required for persistent infection

Nature communications, 2024-02, Vol.15 (1), p.1615-1615, Article 1615

2024

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Stepwise evolution of pandrug-resistance in Klebsiella pneumoniae

Scientific reports, 2015-10, Vol.5 (1), p.15082-15082, Article 15082

2015

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Molecular characterization of a multidrug resistance IncF plasmid from the globally disseminated Escherichia coli ST131 clone

PloS one, 2015-04, Vol.10 (4), p.e0122369

2015

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MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction

BMC genomics, 2021-06, Vol.22 (1), p.1-474, Article 474

2021

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Genomic epidemiology reveals geographical clustering of multidrug-resistant Escherichia coli ST131 associated with bacteraemia in Wales

Nature communications, 2024-02, Vol.15 (1), p.1371-1371, Article 1371

2024

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Integrating multiple genomic technologies to investigate an outbreak of carbapenemase-producing Enterobacter hormaechei

Nature communications, 2020-01, Vol.11 (1), p.466-11, Article 466

2020

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Characterization of pro-inflammatory flagellin proteins produced by Lactobacillus ruminis and related motile Lactobacilli

PloS one, 2012-07, Vol.7 (7), p.e40592-e40592

2012

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Modifications in the pmrB gene are the primary mechanism for the development of chromosomally encoded resistance to polymyxins in uropathogenic Escherichia coli

Journal of antimicrobial chemotherapy, 2017-10, Vol.72 (10), p.2729-2736

2017

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Treatment Failure Due to Adaptive Resistance Mechanisms in a Severe and Complicated Bloodstream Infection Due to Elizabethkingia meningoseptica

Microbial drug resistance (Larchmont, N.Y.), 2023-04, Vol.29 (4), p.145

2023

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SMRT sequencing reveals differential patterns of methylation in two O111:H- STEC isolates from a hemolytic uremic syndrome outbreak in Australia

Scientific reports, 2019-07, Vol.9 (1), p.9436-11, Article 9436

2019

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Differential Afa/Dr Fimbriae Expression in the Multidrug-Resistant Escherichia coli ST131 Clone

mBio, 2022-02, Vol.13 (1), p.e0351921-e0351921

2022

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Rapid nanopore sequencing and predictive susceptibility testing of positive blood cultures from intensive care patients with sepsis

Microbiology spectrum, 2024-02, Vol.12 (2), p.e0306523-e0306523

2024

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Using Genomics To Investigate an Outbreak of Vancomycin-Resistant Enterococcus faecium ST78 at a Large Tertiary Hospital in Queensland

Microbiology spectrum, 2023-06, Vol.11 (3), p.e0420422-e0420422

2023

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Complex Multilevel Control of Hemolysin Production by Uropathogenic Escherichia coli

mBio, 2019-10, Vol.10 (5)

2019

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Optimising Treatment Outcomes for Children and Adults Through Rapid Genome Sequencing of Sepsis Pathogens. A Study Protocol for a Prospective, Multi-Centre Trial (DIRECT)

Frontiers in cellular and infection microbiology, 2021-06, Vol.11, p.667680-667680

2021

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Molecular Epidemiology of Clinical and Colonizing Methicillin-Resistant Staphylococcus Isolates in Companion Animals

Frontiers in veterinary science, 2021-04, Vol.8, p.620491-620491

2021

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Lineage-Specific Methyltransferases Define the Methylome of the Globally Disseminated Escherichia coli ST131 Clone

mBio, 2015-11, Vol.6 (6), p.e01602-e01615

2015

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Emergence and clonal expansion of a qacA-harbouring sequence type 45 lineage of methicillin-resistant Staphylococcus aureus

Communications biology, 2024-03, Vol.7 (1), p.349-349, Article 349

2024

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Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts

Microbial cell factories, 2011-08, Vol.10 Suppl 1 (S1), p.S13-S13, Article S13

2011

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Antimicrobial Resistance in ESKAPE Pathogens

GraphSNP: an interactive distance viewer for investigating outbreaks and transmission networks using a graph approach

The complete genome sequence of Escherichia coli EC958: a high quality reference sequence for the globally disseminated multidrug resistant E. coli O25b:H4-ST131 clone

Global dissemination of a multidrug resistant Escherichia coli clone

Predicting nitroimidazole antibiotic resistance mutations in Mycobacterium tuberculosis with protein engineering

TcrXY is an acid-sensing two-component transcriptional regulator of Mycobacterium tuberculosis required for persistent infection

Stepwise evolution of pandrug-resistance in Klebsiella pneumoniae

Molecular characterization of a multidrug resistance IncF plasmid from the globally disseminated Escherichia coli ST131 clone

MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction

Genomic epidemiology reveals geographical clustering of multidrug-resistant Escherichia coli ST131 associated with bacteraemia in Wales

Integrating multiple genomic technologies to investigate an outbreak of carbapenemase-producing Enterobacter hormaechei

Characterization of pro-inflammatory flagellin proteins produced by Lactobacillus ruminis and related motile Lactobacilli

Modifications in the pmrB gene are the primary mechanism for the development of chromosomally encoded resistance to polymyxins in uropathogenic Escherichia coli

Treatment Failure Due to Adaptive Resistance Mechanisms in a Severe and Complicated Bloodstream Infection Due to Elizabethkingia meningoseptica

SMRT sequencing reveals differential patterns of methylation in two O111:H- STEC isolates from a hemolytic uremic syndrome outbreak in Australia

High-risk Escherichia coli clones that cause neonatal meningitis and association with recrudescent infection

Differential Afa/Dr Fimbriae Expression in the Multidrug-Resistant Escherichia coli ST131 Clone

Rapid nanopore sequencing and predictive susceptibility testing of positive blood cultures from intensive care patients with sepsis

Using Genomics To Investigate an Outbreak of Vancomycin-Resistant Enterococcus faecium ST78 at a Large Tertiary Hospital in Queensland

Complex Multilevel Control of Hemolysin Production by Uropathogenic Escherichia coli

Optimising Treatment Outcomes for Children and Adults Through Rapid Genome Sequencing of Sepsis Pathogens. A Study Protocol for a Prospective, Multi-Centre Trial (DIRECT)

Molecular Epidemiology of Clinical and Colonizing Methicillin-Resistant Staphylococcus Isolates in Companion Animals

Lineage-Specific Methyltransferases Define the Methylome of the Globally Disseminated Escherichia coli ST131 Clone

Emergence and clonal expansion of a qacA-harbouring sequence type 45 lineage of methicillin-resistant Staphylococcus aureus

Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts

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