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Microbial defenses against mobile genetic elements and viruses: Who defends whom from what?

PLoS biology, 2022-01, Vol.20 (1), p.e3001514-e3001514

2022

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The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems

PLoS genetics, 2012-09, Vol.8 (9), p.e1002983-e1002983

2012

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Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility

PLoS biology, 2019-07, Vol.17 (7), p.e3000390-e3000390

2019

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The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella

PloS one, 2010-06, Vol.5 (6), p.e11126-e11126

2010

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Genetic and life-history traits associated with the distribution of prophages in bacteria

The ISME Journal, 2016-11, Vol.10 (11), p.2744-2754

2016

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Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity

Nature genetics, 2016-03, Vol.48 (3), p.308-313

2016

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MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems

PloS one, 2014-10, Vol.9 (10), p.e110726-e110726

2014

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Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae

PLoS biology, 2021-07, Vol.19 (7), p.e3001276-e3001276

2021

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Pervasive domestication of defective prophages by bacteria

Proceedings of the National Academy of Sciences - PNAS, 2014-08, Vol.111 (33), p.12127-12132

2014

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The systemic imprint of growth and its uses in ecological (meta)genomics

PLoS genetics, 2010-01, Vol.6 (1), p.e1000808

2010

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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

PLoS computational biology, 2020-03, Vol.16 (3), p.e1007732-e1007732

2020

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The chromosomal organization of horizontal gene transfer in bacteria

Nature communications, 2017-10, Vol.8 (1), p.841-11, Article 841

2017

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Integrative and conjugative elements and their hosts: composition, distribution and organization

Nucleic acids research, 2017-09, Vol.45 (15), p.8943-8956

2017

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Phage-plasmids promote recombination and emergence of phages and plasmids

Nature communications, 2024-02, Vol.15 (1), p.1545-1545, Article 1545

2024

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Adaptation to novel spatially-structured environments is driven by the capsule and alters virulence-associated traits

Nature communications, 2022-08, Vol.13 (1), p.4751-4751, Article 4751

2022

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Mobility of Plasmids

Microbiology and Molecular Biology Reviews, 2010-09, Vol.74 (3), p.434-452

2010

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The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts

Nucleic acids research, 2014-09, Vol.42 (16), p.10618-10631

2014

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Origins of transfer establish networks of functional dependencies for plasmid transfer by conjugation

Nucleic acids research, 2023-04, Vol.51 (7), p.3001-3016

2023

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Ultrafast search of all deposited bacterial and viral genomic data

Nature biotechnology, 2019-02, Vol.37 (2), p.152-159

2019

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Zircon saturation in silicate melts: a new and improved model for aluminous and alkaline melts

Contributions to mineralogy and petrology, 2016-03, Vol.171 (3), p.1-12, Article 21

2016

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The organization of the bacterial genome

Annual review of genetics, 2008-01, Vol.42 (1), p.211-233

Rocha, Eduardo P C

2008

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Human commensal gut Proteobacteria withstand type VI secretion attacks through immunity protein-independent mechanisms

Nature communications, 2021-10, Vol.12 (1), p.5751-5751, Article 5751

2021

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Restriction-modification systems have shaped the evolution and distribution of plasmids across bacteria

Nucleic acids research, 2023-07, Vol.51 (13), p.6806-6818

2023

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IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella

Microorganisms (Basel), 2022-03, Vol.10 (4), p.700

2022

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Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages

Nature communications, 2024-01, Vol.15 (1), p.664-13, Article 664

2024

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Microbial defenses against mobile genetic elements and viruses: Who defends whom from what?

The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems

Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility

The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella

Genetic and life-history traits associated with the distribution of prophages in bacteria

Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity

MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems

Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae

Pervasive domestication of defective prophages by bacteria

The systemic imprint of growth and its uses in ecological (meta)genomics

PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

The chromosomal organization of horizontal gene transfer in bacteria

Integrative and conjugative elements and their hosts: composition, distribution and organization

Phage-plasmids promote recombination and emergence of phages and plasmids

Adaptation to novel spatially-structured environments is driven by the capsule and alters virulence-associated traits

Mobility of Plasmids

The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts

Origins of transfer establish networks of functional dependencies for plasmid transfer by conjugation

Ultrafast search of all deposited bacterial and viral genomic data

Zircon saturation in silicate melts: a new and improved model for aluminous and alkaline melts

The organization of the bacterial genome

Human commensal gut Proteobacteria withstand type VI secretion attacks through immunity protein-independent mechanisms

Restriction-modification systems have shaped the evolution and distribution of plasmids across bacteria

IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella

Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages

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