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New Glycoproteomics Software, GlycoPep Evaluator, Generates Decoy Glycopeptides de Novo and Enables Accurate False Discovery Rate Analysis for Small Data Sets

Analytical chemistry (Washington), 2014-09, Vol.86 (18), p.9212-9219

2014

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Characterizing O‑Linked Glycopeptides by Electron Transfer Dissociation: Fragmentation Rules and Applications in Data Analysis

Analytical chemistry (Washington), 2013-09, Vol.85 (17), p.8403-8411

2013

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Label-Free Quantitation: A New Glycoproteomics Approach

Journal of the American Society for Mass Spectrometry, 2009-06, Vol.20 (6), p.1048-1059

2009

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The Aristotle Classifier: Using the Whole Glycomic Profile To Indicate a Disease State

Analytical chemistry (Washington), 2019-09, Vol.91 (17), p.11070-11077

2019

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Clinically Viable Assay for Monitoring Uromodulin Glycosylation

Journal of the American Society for Mass Spectrometry, 2021-02, Vol.32 (2), p.436-443

2021

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Comparison of HPLC/ESI-FTICR MS Versus MALDI-TOF/TOF MS for Glycopeptide Analysis of a Highly Glycosylated HIV Envelope Glycoprotein

Journal of the American Society for Mass Spectrometry, 2008-08, Vol.19 (8), p.1209-1220

2008

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Absolute Quantitation of Glycosylation Site Occupancy Using Isotopically Labeled Standards and LC-MS

Journal of the American Society for Mass Spectrometry, 2014-06, Vol.25 (6), p.1012-1017

2014

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The opportunity cost of automated glycopeptide analysis: case study profiling the SARS-CoV-2 S glycoprotein

Analytical and bioanalytical chemistry, 2021-12, Vol.413 (29), p.7215-7227

2021

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How to Apply Supervised Machine Learning Tools to MS Imaging Files: Case Study with Cancer Spheroids Undergoing Treatment with the Monoclonal Antibody Cetuximab

Journal of the American Society for Mass Spectrometry, 2020-07, Vol.31 (7), p.1350-1357

2020

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Method for Quantifying Oxidized Methionines and Application to HIV-1 Env

Journal of the American Society for Mass Spectrometry, 2018-10, Vol.29 (10), p.2041-2047

2018

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Simplification of Mass Spectral Analysis of Acidic Glycopeptides Using GlycoPep ID

Analytical chemistry (Washington), 2007-04, Vol.79 (8), p.3065-3074

2007

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GlycoPep DB: A Tool for Glycopeptide Analysis Using a “Smart Search”

Analytical chemistry (Washington), 2007-02, Vol.79 (4), p.1708-1713

2007

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GlycoPep Detector: A Tool for Assigning Mass Spectrometry Data of N‑Linked Glycopeptides on the Basis of Their Electron Transfer Dissociation Spectra

Analytical chemistry (Washington), 2013-05, Vol.85 (10), p.5023-5032

2013

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HAMS: High-Affinity Mass Spectrometry Screening. A High-Throughput Screening Method for Identifying the Tightest-Binding Lead Compounds for Target Proteins with No False Positive Identifications

Journal of the American Society for Mass Spectrometry, 2016-11, Vol.27 (11), p.1870-1877

2016

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GlycoPep MassList: software to generate massive inclusion lists for glycopeptide analyses

Analytical and bioanalytical chemistry, 2017-01, Vol.409 (2), p.561-570

2017

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GlycoPep Grader: A Web-Based Utility for Assigning the Composition of N-Linked Glycopeptides

Analytical chemistry (Washington), 2012-06, Vol.84 (11), p.4821-4829

2012

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Simple Approach to Assign Disulfide Connectivity Using Extracted Ion Chromatograms of Electron Transfer Dissociation Spectra

Analytical chemistry (Washington), 2013-01, Vol.85 (2), p.1192-1199

2013

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Phosphonium labeling for increasing metabolomic coverage of neutral lipids using electrospray ionization mass spectrometry

Rapid communications in mass spectrometry, 2009-06, Vol.23 (12), p.1849-1855

2009

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A General Protease Digestion Procedure for Optimal Protein Sequence Coverage and Post-Translational Modifications Analysis of Recombinant Glycoproteins: Application to the Characterization of Human Lysyl Oxidase-like 2 Glycosylation

Analytical chemistry (Washington), 2011-11, Vol.83 (22), p.8484-8491

2011

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Dissecting the dissociation patterns of fucosylated glycopeptides undergoing CID: a case study in improving automated glycopeptide analysis scoring algorithms

Analytical methods, 2018, Vol.1 (2), p.256-262

2018

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Desorption/Ionization on Silicon Time-of-Flight/Time-of-Flight Mass Spectrometry

Analytical chemistry (Washington), 2003-05, Vol.75 (10), p.2504-2506

2003

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Maximizing Coverage of Glycosylation Heterogeneity in MALDI-MS Analysis of Glycoproteins with Up to 27 Glycosylation Sites

Analytical chemistry (Washington), 2008-05, Vol.80 (9), p.3144-3158

2008

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Disulfide Bond Characterization of Endogenous IgG3 Monoclonal Antibodies Using LC-MS: An Investigation of IgG3 Disulfide-mediated Isoforms

Analytical methods, 2016-08, Vol.8 (31), p.6046-6055

2016

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High Sensitivity and Analyte Capture with Desorption/Ionization Mass Spectrometry on Silylated Porous Silicon

Analytical chemistry (Washington), 2004-08, Vol.76 (15), p.4484-4489

2004

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Distinguishing Phosphorylation and Sulfation in Carbohydrates and Glycoproteins Using Ion-Pairing and Mass Spectrometry

Journal of the American Society for Mass Spectrometry, 2006-09, Vol.17 (9), p.1282-1288

2006

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New Glycoproteomics Software, GlycoPep Evaluator, Generates Decoy Glycopeptides de Novo and Enables Accurate False Discovery Rate Analysis for Small Data Sets

Characterizing O‑Linked Glycopeptides by Electron Transfer Dissociation: Fragmentation Rules and Applications in Data Analysis

Label-Free Quantitation: A New Glycoproteomics Approach

The Aristotle Classifier: Using the Whole Glycomic Profile To Indicate a Disease State

Clinically Viable Assay for Monitoring Uromodulin Glycosylation

Comparison of HPLC/ESI-FTICR MS Versus MALDI-TOF/TOF MS for Glycopeptide Analysis of a Highly Glycosylated HIV Envelope Glycoprotein

Absolute Quantitation of Glycosylation Site Occupancy Using Isotopically Labeled Standards and LC-MS

The opportunity cost of automated glycopeptide analysis: case study profiling the SARS-CoV-2 S glycoprotein

How to Apply Supervised Machine Learning Tools to MS Imaging Files: Case Study with Cancer Spheroids Undergoing Treatment with the Monoclonal Antibody Cetuximab

Method for Quantifying Oxidized Methionines and Application to HIV-1 Env

Simplification of Mass Spectral Analysis of Acidic Glycopeptides Using GlycoPep ID

GlycoPep DB: A Tool for Glycopeptide Analysis Using a “Smart Search”

GlycoPep Detector: A Tool for Assigning Mass Spectrometry Data of N‑Linked Glycopeptides on the Basis of Their Electron Transfer Dissociation Spectra

HAMS: High-Affinity Mass Spectrometry Screening. A High-Throughput Screening Method for Identifying the Tightest-Binding Lead Compounds for Target Proteins with No False Positive Identifications

GlycoPep MassList: software to generate massive inclusion lists for glycopeptide analyses

GlycoPep Grader: A Web-Based Utility for Assigning the Composition of N-Linked Glycopeptides

Simple Approach to Assign Disulfide Connectivity Using Extracted Ion Chromatograms of Electron Transfer Dissociation Spectra

Phosphonium labeling for increasing metabolomic coverage of neutral lipids using electrospray ionization mass spectrometry

A General Protease Digestion Procedure for Optimal Protein Sequence Coverage and Post-Translational Modifications Analysis of Recombinant Glycoproteins: Application to the Characterization of Human Lysyl Oxidase-like 2 Glycosylation

Dissecting the dissociation patterns of fucosylated glycopeptides undergoing CID: a case study in improving automated glycopeptide analysis scoring algorithms

Desorption/Ionization on Silicon Time-of-Flight/Time-of-Flight Mass Spectrometry

Maximizing Coverage of Glycosylation Heterogeneity in MALDI-MS Analysis of Glycoproteins with Up to 27 Glycosylation Sites

Disulfide Bond Characterization of Endogenous IgG3 Monoclonal Antibodies Using LC-MS: An Investigation of IgG3 Disulfide-mediated Isoforms

High Sensitivity and Analyte Capture with Desorption/Ionization Mass Spectrometry on Silylated Porous Silicon

Distinguishing Phosphorylation and Sulfation in Carbohydrates and Glycoproteins Using Ion-Pairing and Mass Spectrometry

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