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Infection control in the new age of genomic epidemiology

American journal of infection control, 2017-02, Vol.45 (2), p.170-179

2017

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A prospective bacterial whole-genome-sequencing-based surveillance programme for comprehensive early detection of healthcare-associated infection transmission in paediatric oncology patients

The Journal of hospital infection, 2024-01, Vol.143, p.53-63

2024

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Repeated transmission of SARS-CoV-2 in an overcrowded Irish emergency department elucidated by whole-genome sequencing

The Journal of hospital infection, 2022-08, Vol.126, p.1-9

2022

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Genomic analyses of Neisseria gonorrhoeae reveal an association of the gonococcal genetic island with antimicrobial resistance

The Journal of infection, 2016-12, Vol.73 (6), p.578-587

2016

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Genomic survey of SARS-CoV-2 vaccine breakthrough infections in healthcare workers from Kerala, India

The Journal of infection, 2021-08, Vol.83 (2), p.237-279

2021

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Genomic characterization of Japanese meningococcal strains isolated over a 17-year period between 2003 and 2020 in Japan

Vaccine, 2023-01, Vol.41 (2), p.416-426

2023

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Lessons learned: use of WGS in real-time investigation of suspected intrahospital SARS-CoV-2 outbreaks

The Journal of hospital infection, 2023-01, Vol.131, p.81-88

2023

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Personalized Medicine and Infectious Disease Management

Trends in microbiology (Regular ed.), 2017-11, Vol.25 (11), p.875-876

2017

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Whole-genome sequencing as a tool for studying the microevolution of drug-resistant serial Mycobacterium tuberculosis isolates

Tuberculosis (Edinburgh, Scotland), 2021-12, Vol.131, p.102137, Article 102137

2021

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Dissecting the genome sequence of a clinical isolated Cunninghamella bertholletiae Z2 strain with rich cytochrome P450 enzymes (Article)

Infection, genetics and evolution, 2024-06, Vol.120, p.105575-105575, Article 105575

2024

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Genomic characterization of Mycobacterium lepromatosis from ENL patients from India

Infection, genetics and evolution, 2023-12, Vol.116, p.105537-105537, Article 105537

2023

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German coasts harbor non-O1/non-O139 Vibrio cholerae with clinical virulence gene profiles

Infection, genetics and evolution, 2024-06, Vol.120, p.105587-105587, Article 105587

2024

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Nontuberculous mycobacteria: Insights on taxonomy and evolution

Infection, genetics and evolution, 2019-08, Vol.72, p.159-168

Turenne, Christine Y.

2019

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SARS-CoV-2 genomic surveillance as an evidence-based infection control approach in an offshore petroleum employee population

American journal of infection control, 2022-09, Vol.50 (9), p.1013-1019

2022

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In-depth comparison of library pooling strategies for multiplexing bacterial species in NGS

Diagnostic microbiology and infectious disease, 2019-09, Vol.95 (1), p.28-33

2019

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A novel genomic island harbouring lsa(E) and lnu(B) genes and a defective prophage in a Streptococcus pyogenes isolate resistant to lincosamide, streptogramin A and pleuromutilin antibiotics

International journal of antimicrobial agents, 2019-11, Vol.54 (5), p.647-651

2019

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Real-time whole genome sequencing to control a Streptococcus pyogenes outbreak at a national orthopaedic hospital

The Journal of hospital infection, 2019-09, Vol.103 (1), p.21-26

2019

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Research Focus: beyond the 100 000 genomes

The Lancet (British edition), 2019-01, Vol.393 (10166), p.15-16

Watts, Geoff

2019

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Genomic and spatial analysis reveal the transmission dynamics of tuberculosis in areas with high incidence of Zhejiang, China: A prospective cohort study

Infection, genetics and evolution, 2024-07, Vol.121, p.105603-105603, Article 105603

2024

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Genomic analysis of a pan-resistant Klebsiella pneumoniae sequence type 11 identified in Japan in 2016

International journal of antimicrobial agents, 2020-04, Vol.55 (4), p.105854-105854, Article 105854

2020

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Pathways and strategies followed in the genomic epidemiology of Mycobacterium tuberculosis

Infection, genetics and evolution, 2019-08, Vol.72, p.4-9

García de Viedma, Darío

2019

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Genomic characterization of uncommon human G3P[6] rotavirus strains that have emerged in Kenya after rotavirus vaccine introduction, and pre-vaccine human G8P[4] rotavirus strains

Infection, genetics and evolution, 2019-03, Vol.68, p.231-248

2019

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Vancomycin-resistant enterococcus bacteraemia in an endemic region: clinical features and genomic analysis: a 12-year cohort

The Journal of hospital infection, 2022-03, Vol.121, p.105-113

2022

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Investigation of healthcare-associated COVID-19 in a large French hospital group by whole-genome sequencing

Microbiological research, 2022-10, Vol.263, p.127133-127133, Article 127133

2022

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Investigation of the virulence and genomics of Aeromonas salmonicida strains isolated from human patients

Infection, genetics and evolution, 2019-03, Vol.68, p.1-9

2019

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Infection control in the new age of genomic epidemiology

A prospective bacterial whole-genome-sequencing-based surveillance programme for comprehensive early detection of healthcare-associated infection transmission in paediatric oncology patients

Repeated transmission of SARS-CoV-2 in an overcrowded Irish emergency department elucidated by whole-genome sequencing

Genomic analyses of Neisseria gonorrhoeae reveal an association of the gonococcal genetic island with antimicrobial resistance

Genomic survey of SARS-CoV-2 vaccine breakthrough infections in healthcare workers from Kerala, India

Genomic characterization of Japanese meningococcal strains isolated over a 17-year period between 2003 and 2020 in Japan

Lessons learned: use of WGS in real-time investigation of suspected intrahospital SARS-CoV-2 outbreaks

Personalized Medicine and Infectious Disease Management

Whole-genome sequencing as a tool for studying the microevolution of drug-resistant serial Mycobacterium tuberculosis isolates

Dissecting the genome sequence of a clinical isolated Cunninghamella bertholletiae Z2 strain with rich cytochrome P450 enzymes (Article)

Genomic characterization of Mycobacterium lepromatosis from ENL patients from India

German coasts harbor non-O1/non-O139 Vibrio cholerae with clinical virulence gene profiles

Nontuberculous mycobacteria: Insights on taxonomy and evolution

SARS-CoV-2 genomic surveillance as an evidence-based infection control approach in an offshore petroleum employee population

In-depth comparison of library pooling strategies for multiplexing bacterial species in NGS

A novel genomic island harbouring lsa(E) and lnu(B) genes and a defective prophage in a Streptococcus pyogenes isolate resistant to lincosamide, streptogramin A and pleuromutilin antibiotics

Real-time whole genome sequencing to control a Streptococcus pyogenes outbreak at a national orthopaedic hospital

Research Focus: beyond the 100 000 genomes

Genomic and spatial analysis reveal the transmission dynamics of tuberculosis in areas with high incidence of Zhejiang, China: A prospective cohort study

Genomic analysis of a pan-resistant Klebsiella pneumoniae sequence type 11 identified in Japan in 2016

Pathways and strategies followed in the genomic epidemiology of Mycobacterium tuberculosis

Genomic characterization of uncommon human G3P[6] rotavirus strains that have emerged in Kenya after rotavirus vaccine introduction, and pre-vaccine human G8P[4] rotavirus strains

Vancomycin-resistant enterococcus bacteraemia in an endemic region: clinical features and genomic analysis: a 12-year cohort

Investigation of healthcare-associated COVID-19 in a large French hospital group by whole-genome sequencing

Investigation of the virulence and genomics of Aeromonas salmonicida strains isolated from human patients

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