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jPHYDIT: a JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences

Bioinformatics, 2005-07, Vol.21 (14), p.3171-3173

2005

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jSquid: a Java applet for graphical on-line network exploration

Bioinformatics, 2008-06, Vol.24 (12), p.1467-1468

2008

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C.U.R.R.F. (Codon Usage regarding Restriction Finder): A Free Java®-Based Tool to Detect Potential Restriction Sites in Both Coding and Non-Coding DNA Sequences

Molecular biotechnology, 2012-10, Vol.52 (2), p.123-128

2012

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The GlycomeAtlas tool for visualizing and querying glycome data

Bioinformatics, 2012-11, Vol.28 (21), p.2849-2850

2012

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Ontologizer 2.0—a multifunctional tool for GO term enrichment analysis and data exploration

Bioinformatics, 2008-07, Vol.24 (14), p.1650-1651

2008

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ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text

Bioinformatics, 2005-07, Vol.21 (14), p.3191-3192

SETTLES, Burr

2005

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Using chemical organization theory for model checking

Bioinformatics, 2009-08, Vol.25 (15), p.1915-1922

2009

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MutationFinder: a high-performance system for extracting point mutation mentions from text

Bioinformatics, 2007-07, Vol.23 (14), p.1862-1865

2007

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Correction of sequencing errors in a mixed set of reads

Bioinformatics, 2010-05, Vol.26 (10), p.1284-1290

SALMELA, Leena

2010

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Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data

Bioinformatics (Oxford, England), 2011-02, Vol.27 (4), p.572-577

2011

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The automation of Nested Clade Phylogeographic Analysis

Bioinformatics, 2007-02, Vol.23 (4), p.509-510

Panchal, Mahesh

2007

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Combo: a whole genome comparative browser

Bioinformatics, 2006-07, Vol.22 (14), p.1782-1783

2006

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PiNGO: a Cytoscape plugin to find candidate genes in biological networks

Bioinformatics, 2011-04, Vol.27 (7), p.1030-1031

2011

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baobabLUNA: the solution space of sorting by reversals

Bioinformatics, 2009-07, Vol.25 (14), p.1833-1835

Braga, Marília D. V.

2009

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GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop

Bioinformatics, 2010-11, Vol.26 (22), p.2927-2928

2010

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Computing chemical organizations in biological networks

Bioinformatics, 2008-07, Vol.24 (14), p.1611-1618

2008

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PRINCIPLE: a tool for associating genes with diseases via network propagation

Bioinformatics, 2011-12, Vol.27 (23), p.3325-3326

2011

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Genesis: cluster analysis of microarray data

Bioinformatics, 2002-01, Vol.18 (1), p.207-208

2002

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SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts

Bioinformatics, 2012-09, Vol.28 (18), p.2385-2387

2012

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ReMark: an automatic program for clustering orthologs flexibly combining a Recursive and a Markov clustering algorithms

Bioinformatics (Oxford, England), 2011-06, Vol.27 (12), p.1731-1733

2011

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BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms

Bioinformatics, 2012-08, Vol.28 (15), p.2082-2083

2012

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MuSiC: a tool for multiple sequence alignment with constraints

Bioinformatics, 2004-09, Vol.20 (14), p.2309-2311

2004

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JVirGel 2.0: computational prediction of proteomes separated via two-dimensional gel electrophoresis under consideration of membrane and secreted proteins

Bioinformatics, 2006-10, Vol.22 (19), p.2441-2443

2006

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Multiple structural alignment and clustering of RNA sequences

Bioinformatics, 2007-04, Vol.23 (8), p.926-932

2007

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A novel algorithm and web-based tool for comparing two alternative phylogenetic trees

Bioinformatics, 2006-01, Vol.22 (1), p.117-119

2006

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jPHYDIT: a JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences

jSquid: a Java applet for graphical on-line network exploration

C.U.R.R.F. (Codon Usage regarding Restriction Finder): A Free Java®-Based Tool to Detect Potential Restriction Sites in Both Coding and Non-Coding DNA Sequences

The GlycomeAtlas tool for visualizing and querying glycome data

Ontologizer 2.0—a multifunctional tool for GO term enrichment analysis and data exploration

ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text

Using chemical organization theory for model checking

MutationFinder: a high-performance system for extracting point mutation mentions from text

Correction of sequencing errors in a mixed set of reads

Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data

The automation of Nested Clade Phylogeographic Analysis

Combo: a whole genome comparative browser

PiNGO: a Cytoscape plugin to find candidate genes in biological networks

baobabLUNA: the solution space of sorting by reversals

GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop

Computing chemical organizations in biological networks

PRINCIPLE: a tool for associating genes with diseases via network propagation

Genesis: cluster analysis of microarray data

SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts

ReMark: an automatic program for clustering orthologs flexibly combining a Recursive and a Markov clustering algorithms

BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms

MuSiC: a tool for multiple sequence alignment with constraints

JVirGel 2.0: computational prediction of proteomes separated via two-dimensional gel electrophoresis under consideration of membrane and secreted proteins

Multiple structural alignment and clustering of RNA sequences

A novel algorithm and web-based tool for comparing two alternative phylogenetic trees

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