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Prediction of HIV-1 sensitivity to broadly neutralizing antibodies shows a trend towards resistance over time

PLoS computational biology, 2017-10, Vol.13 (10), p.e1005789-e1005789

2017

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The AIMe registry for artificial intelligence in biomedical research

Nature methods, 2021-10, Vol.18 (10), p.1128-1131

2021

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Predicting functional effects of ion channel variants using new phenotypic machine learning methods

PLoS computational biology, 2023-03, Vol.19 (3), p.e1010959-e1010959

2023

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Genetic sequence-based prediction of long-range chromatin interactions suggests a potential role of short tandem repeat sequences in genome organization

BMC bioinformatics, 2017-04, Vol.18 (1), p.218-218, Article 218

2017

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Evaluation of a Rapid Antigen Test To Detect SARS-CoV-2 Infection and Identify Potentially Infectious Individuals

Journal of clinical microbiology, 2021-08, Vol.59 (9), p.e0089621-e0089621

2021

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Kinetics and correlates of the neutralizing antibody response to SARS-CoV-2 infection in humans

Cell host & microbe, 2021-06, Vol.29 (6), p.917-929.e4

2021

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Inherently interpretable position-aware convolutional motif kernel networks for biological sequencing data

Scientific reports, 2023-10, Vol.13 (1), p.17216-17216, Article 17216

2023

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OpenMS - an open-source software framework for mass spectrometry

BMC bioinformatics, 2008-03, Vol.9 (1), p.163-163, Article 163

2008

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Insights to HIV-1 coreceptor usage by estimating HLA adaptation with Bayesian generalized linear mixed models

PLoS computational biology, 2023-12, Vol.19 (12), p.e1010355-e1010355

2023

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Prediction of VRC01 neutralization sensitivity by HIV-1 gp160 sequence features

PLoS computational biology, 2019-04, Vol.15 (4), p.e1006952-e1006952

2019

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Machine learning prediction of malaria vaccine efficacy based on antibody profiles

PLoS computational biology, 2024-06, Vol.20 (6), p.e1012131

2024

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Improving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing data

Bioinformatics, 2012-09, Vol.28 (18), p.i589-i595

2012

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TOPP—the OpenMS proteomics pipeline

Bioinformatics, 2007-01, Vol.23 (2), p.e191-e197

2007

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Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1

Journal of Virology, 2012-05, Vol.86 (9), p.5230-5243

2012

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EuCARE-POSTCOVID Study: a multicentre cohort study on long-term post-COVID-19 manifestations

BMC infectious diseases, 2023-10, Vol.23 (1), p.1-684, Article 684

2023

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SARS-CoV-2 trends in Italy, Germany and Portugal and school opening during the period of Omicron variant dominance: A quasi experimental study in the EuCARE project

International journal of infectious diseases, 2024-01, Vol.138, p.63-72

2024

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Clinical use, efficacy, and durability of maraviroc for antiretroviral therapy in routine care: A European survey

PloS one, 2019-11, Vol.14 (11), p.e0225381

2019

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Performance Evaluation of a Genotypic Tropism Test Using HIV-1 CRF01_AE Isolates in Japan

Japanese Journal of Infectious Diseases, 2018/07/31, Vol.71(4), pp.264-266

2018

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EuCARE-hospitalised study protocol: a cohort study of patients hospitalised with COVID-19 in the EuCARE project

BMC infectious diseases, 2023-10, Vol.23 (1), p.1-690, Article 690

2023

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Molecular Epidemiology of HIV-1 in Eastern Europe and Russia

Viruses, 2022-09, Vol.14 (10), p.2099

2022

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Correlates of Protective Cellular Immunity Revealed by Analysis of Population-Level Immune Escape Pathways in HIV-1

Journal of Virology, 2012-12, Vol.86 (24), p.13202-13216

2012

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Predicting the functional effects of voltage-gated potassium channel missense variants with multi-task learning

EBioMedicine, 2022-07, Vol.81, p.104115, Article 104115

2022

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Using drug exposure for predicting drug resistance - A data-driven genotypic interpretation tool

PloS one, 2017-04, Vol.12 (4), p.e0174992-e0174992

2017

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A study on interoperability between two Personal Health Train infrastructures in leukodystrophy data analysis

Scientific data, 2024-06, Vol.11 (1), p.663-20, Article 663

2024

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Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics

BMC bioinformatics, 2007-11, Vol.8 (1), p.468-468, Article 468

2007

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Prediction of HIV-1 sensitivity to broadly neutralizing antibodies shows a trend towards resistance over time

The AIMe registry for artificial intelligence in biomedical research

Predicting functional effects of ion channel variants using new phenotypic machine learning methods

Genetic sequence-based prediction of long-range chromatin interactions suggests a potential role of short tandem repeat sequences in genome organization

Evaluation of a Rapid Antigen Test To Detect SARS-CoV-2 Infection and Identify Potentially Infectious Individuals

Kinetics and correlates of the neutralizing antibody response to SARS-CoV-2 infection in humans

Inherently interpretable position-aware convolutional motif kernel networks for biological sequencing data

OpenMS - an open-source software framework for mass spectrometry

Insights to HIV-1 coreceptor usage by estimating HLA adaptation with Bayesian generalized linear mixed models

Prediction of VRC01 neutralization sensitivity by HIV-1 gp160 sequence features

Machine learning prediction of malaria vaccine efficacy based on antibody profiles

Improving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing data

TOPP—the OpenMS proteomics pipeline

Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1

EuCARE-POSTCOVID Study: a multicentre cohort study on long-term post-COVID-19 manifestations

SARS-CoV-2 trends in Italy, Germany and Portugal and school opening during the period of Omicron variant dominance: A quasi experimental study in the EuCARE project

Clinical use, efficacy, and durability of maraviroc for antiretroviral therapy in routine care: A European survey

Performance Evaluation of a Genotypic Tropism Test Using HIV-1 CRF01_AE Isolates in Japan

EuCARE-hospitalised study protocol: a cohort study of patients hospitalised with COVID-19 in the EuCARE project

Molecular Epidemiology of HIV-1 in Eastern Europe and Russia

Correlates of Protective Cellular Immunity Revealed by Analysis of Population-Level Immune Escape Pathways in HIV-1

Predicting the functional effects of voltage-gated potassium channel missense variants with multi-task learning

Using drug exposure for predicting drug resistance - A data-driven genotypic interpretation tool

A study on interoperability between two Personal Health Train infrastructures in leukodystrophy data analysis

Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics

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