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Mass Spectrometry Applied to Bottom-Up Proteomics: Entering the High-Throughput Era for Hypothesis Testing

Annual review of analytical chemistry (Palo Alto, Calif.), 2016-06, Vol.9 (1), p.449-472

2016

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Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

Molecular & cellular proteomics, 2012-06, Vol.11 (6), p.O111.016717-O111.016717, Article O111.016717

2012

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Quantitative variability of 342 plasma proteins in a human twin population

Molecular systems biology, 2015-02, Vol.11 (2), p.786-n/a

2015

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Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS

Proteomics (Weinheim), 2013-04, Vol.13 (8), p.1247-1256

2013

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Building high-quality assay libraries for targeted analysis of SWATH MS data

Nature protocols, 2015-03, Vol.10 (3), p.426-441

2015

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Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

Nature methods, 2013-12, Vol.10 (12), p.1246-1253

2013

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Reproducible and Consistent Quantification of the Saccharomyces cerevisiae Proteome by SWATH-mass spectrometry

Molecular & cellular proteomics, 2015-03, Vol.14 (3), p.739-749

2015

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Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis

Cell host & microbe, 2015-07, Vol.18 (1), p.96-108

2015

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Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness

Molecular & cellular proteomics, 2014-07, Vol.13 (7), p.1753-1768

2014

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Kinetic adaptations of the intact limb in transfemoral amputees using a microprocessor prosthetic knee

Gait & posture, 2024-02, Vol.108, p.170-176

2024

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Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization

The Journal of cell biology, 2023-02, Vol.222 (2), p.1

2023

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Processing of the ribosomal ubiquitin-like fusion protein FUBI-eS30/FAU is required for 40S maturation and depends on USP36

eLife, 2021-07, Vol.10

2021

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USP16 counteracts mono-ubiquitination of RPS27a and promotes maturation of the 40S ribosomal subunit

eLife, 2020-03, Vol.9

2020

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Walking abilities improvements are associated with pelvis and trunk kinematic adaptations in transfemoral amputees after rehabilitation

Clinical biomechanics (Bristol), 2022-04, Vol.94, p.105619-105619, Article 105619

2022

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Transfemoral amputees adapt their gait during cross-slope walking with specific upper-lower limb coordination

Gait & posture, 2023-09, Vol.105, p.171-176

2023

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Functional organisation of the endomembrane network in the digestive gland of the Venus flytrap: revisiting an old story with a new microscopy toolbox

Journal of microscopy (Oxford), 2020-11, Vol.280 (2), p.86-103

2020

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The GTPase Nog1 co-ordinates the assembly, maturation and quality control of distant ribosomal functional centers

eLife, 2020-01, Vol.9

2020

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Oleate Abrogates Palmitate-Induced Lipotoxicity and Proinflammatory Response in Human Bone Marrow-Derived Mesenchymal Stem Cells and Osteoblastic Cells

Endocrinology (Philadelphia), 2015-11, Vol.156 (11), p.4081-4093

2015

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Effect of temperature changes on the reproductive cycle of roach in Lake Geneva from 1983 to 2001

Journal of fish biology, 2006-08, Vol.69 (2), p.518-534

2006

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Molecular Mechanisms of Mammalian Global Genome Nucleotide Excision Repair

Chemical reviews, 2006-02, Vol.106 (2), p.253-276

2006

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Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps

Nature medicine, 2015-04, Vol.21 (4), p.407-413

2015

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Phosphoproteomic analyses reveal novel cross‐modulation mechanisms between two signaling pathways in yeast

Molecular systems biology, 2014-12, Vol.10 (12), p.767-n/a

2014

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A multicenter study benchmarks software tools for label-free proteome quantification

Nature biotechnology, 2016-11, Vol.34 (11), p.1130-1136

2016

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Initiation of forward gait with lateral occurrence of emotional stimuli: general findings and relevance for pedestrians crossing roads

Experimental brain research, 2017-03, Vol.235 (3), p.777-785

2017

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Conserved Peptide Fragmentation as a Benchmarking Tool for Mass Spectrometers and a Discriminating Feature for Targeted Proteomics

Molecular & cellular proteomics, 2014-08, Vol.13 (8), p.2056-2071

2014

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Mass Spectrometry Applied to Bottom-Up Proteomics: Entering the High-Throughput Era for Hypothesis Testing

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

Quantitative variability of 342 plasma proteins in a human twin population

Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS

Building high-quality assay libraries for targeted analysis of SWATH MS data

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

Reproducible and Consistent Quantification of the Saccharomyces cerevisiae Proteome by SWATH-mass spectrometry

Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis

Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness

Kinetic adaptations of the intact limb in transfemoral amputees using a microprocessor prosthetic knee

Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization

Processing of the ribosomal ubiquitin-like fusion protein FUBI-eS30/FAU is required for 40S maturation and depends on USP36

USP16 counteracts mono-ubiquitination of RPS27a and promotes maturation of the 40S ribosomal subunit

Walking abilities improvements are associated with pelvis and trunk kinematic adaptations in transfemoral amputees after rehabilitation

Transfemoral amputees adapt their gait during cross-slope walking with specific upper-lower limb coordination

Functional organisation of the endomembrane network in the digestive gland of the Venus flytrap: revisiting an old story with a new microscopy toolbox

The GTPase Nog1 co-ordinates the assembly, maturation and quality control of distant ribosomal functional centers

Oleate Abrogates Palmitate-Induced Lipotoxicity and Proinflammatory Response in Human Bone Marrow-Derived Mesenchymal Stem Cells and Osteoblastic Cells

Effect of temperature changes on the reproductive cycle of roach in Lake Geneva from 1983 to 2001

Molecular Mechanisms of Mammalian Global Genome Nucleotide Excision Repair

Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps

Phosphoproteomic analyses reveal novel cross‐modulation mechanisms between two signaling pathways in yeast

A multicenter study benchmarks software tools for label-free proteome quantification

Initiation of forward gait with lateral occurrence of emotional stimuli: general findings and relevance for pedestrians crossing roads

Conserved Peptide Fragmentation as a Benchmarking Tool for Mass Spectrometers and a Discriminating Feature for Targeted Proteomics

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