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Enzyme promiscuity: a mechanistic and evolutionary perspective

Annual review of biochemistry, 2010-01, Vol.79 (1), p.471-505

2010

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Accuracy-rate tradeoffs: how do enzymes meet demands of selectivity and catalytic efficiency?

Current opinion in chemical biology, 2014-08, Vol.21, p.73-80

Tawfik, Dan S

2014

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Protein Dynamism and Evolvability

Science (American Association for the Advancement of Science), 2009-04, Vol.324 (5924), p.203-207

2009

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Metabolite-Enzyme Coevolution: From Single Enzymes to Metabolic Pathways and Networks

Annual review of biochemistry, 2018-06, Vol.87, p.187

2018

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Mutational effects and the evolution of new protein functions

Nature reviews. Genetics, 2010-08, Vol.11 (8), p.572

2010

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How protein stability and new functions trade off

PLoS computational biology, 2008-02, Vol.4 (2), p.e1000002

2008

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Chaperonin overexpression promotes genetic variation and enzyme evolution

Nature, 2009-06, Vol.459 (7247), p.668-673

2009

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The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters

Biochemistry (Easton), 2011-05, Vol.50 (21), p.4402-4410

2011

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Identification of the algal dimethyl sulfide–releasing enzyme: A missing link in the marine sulfur cycle

Science (American Association for the Advancement of Science), 2015-06, Vol.348 (6242), p.1466-1469

2015

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On the Potential Origins of the High Stability of Reconstructed Ancestral Proteins

Molecular biology and evolution, 2016-10, Vol.33 (10), p.2633-2641

2016

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Bridging Themes: Short Protein Segments Found in Different Architectures

Molecular biology and evolution, 2021-05, Vol.38 (6), p.2191-2208

2021

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The universality of enzymatic rate–temperature dependency

Trends in biochemical sciences (Amsterdam. Regular ed.), 2014-01, Vol.39 (1), p.1-7

2014

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A Bird’s-Eye View of Enzyme Evolution: Chemical, Physicochemical, and Physiological Considerations

Chemical reviews, 2018-09, Vol.118 (18), p.8786-8797

2018

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Determining the interaction status and evolutionary fate of duplicated homomeric proteins

PLoS computational biology, 2020-08, Vol.16 (8), p.e1008145-e1008145

2020

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An Ancient Fingerprint Indicates the Common Ancestry of Rossmann-Fold Enzymes Utilizing Different Ribose-Based Cofactors

PLoS biology, 2016-03, Vol.14 (3), p.e1002396-e1002396

2016

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Advances in laboratory evolution of enzymes

Current opinion in chemical biology, 2008-04, Vol.12 (2), p.151-158

2008

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On the Origins of Enzymes: Phosphate-Binding Polypeptides Mediate Phosphoryl Transfer to Synthesize Adenosine Triphosphate

Journal of the American Chemical Society, 2023-03, Vol.145 (15), p.8344-8354

2023

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Rescue of conformational dynamics in enzyme catalysis by directed evolution

Nature communications, 2018-04, Vol.9 (1), p.1314-11, Article 1314

2018

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Reconstructing a Missing Link in the Evolution of a Recently Diverged Phosphotriesterase by Active-Site Loop Remodeling

Biochemistry (Easton), 2012-08, Vol.51 (31), p.6047-6055

2012

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Systematic Mapping of Protein Mutational Space by Prolonged Drift Reveals the Deleterious Effects of Seemingly Neutral Mutations

PLoS computational biology, 2015-08, Vol.11 (8), p.e1004421

2015

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Functional Proteins from Short Peptides: Dayhoff's Hypothesis Turns 50

Angewandte Chemie (International ed.), 2016-12, Vol.55 (52), p.15966-15971

International ed. in English, 2016

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Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme

Nature communications, 2012, Vol.3 (1), p.1257, Article 1257

2012

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Noise-mean relationship in mutated promoters

Genome research, 2012-12, Vol.22 (12), p.2409

2012

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Short and simple sequences favored the emergence of N-helix phospho-ligand binding sites in the first enzymes

Proceedings of the National Academy of Sciences - PNAS, 2020-03, Vol.117 (10), p.5310-5318

2020

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Primordial emergence of a nucleic acid-binding protein via phase separation and statistical ornithine-to-arginine conversion

Proceedings of the National Academy of Sciences - PNAS, 2020-07, Vol.117 (27), p.15731-15739

2020

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Enzyme promiscuity: a mechanistic and evolutionary perspective

Accuracy-rate tradeoffs: how do enzymes meet demands of selectivity and catalytic efficiency?

Protein Dynamism and Evolvability

Metabolite-Enzyme Coevolution: From Single Enzymes to Metabolic Pathways and Networks

Mutational effects and the evolution of new protein functions

How protein stability and new functions trade off

Chaperonin overexpression promotes genetic variation and enzyme evolution

The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters

Identification of the algal dimethyl sulfide–releasing enzyme: A missing link in the marine sulfur cycle

On the Potential Origins of the High Stability of Reconstructed Ancestral Proteins

Bridging Themes: Short Protein Segments Found in Different Architectures

The universality of enzymatic rate–temperature dependency

A Bird’s-Eye View of Enzyme Evolution: Chemical, Physicochemical, and Physiological Considerations

Determining the interaction status and evolutionary fate of duplicated homomeric proteins

An Ancient Fingerprint Indicates the Common Ancestry of Rossmann-Fold Enzymes Utilizing Different Ribose-Based Cofactors

Advances in laboratory evolution of enzymes

On the Origins of Enzymes: Phosphate-Binding Polypeptides Mediate Phosphoryl Transfer to Synthesize Adenosine Triphosphate

Rescue of conformational dynamics in enzyme catalysis by directed evolution

Reconstructing a Missing Link in the Evolution of a Recently Diverged Phosphotriesterase by Active-Site Loop Remodeling

Systematic Mapping of Protein Mutational Space by Prolonged Drift Reveals the Deleterious Effects of Seemingly Neutral Mutations

Functional Proteins from Short Peptides: Dayhoff's Hypothesis Turns 50

Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme

Noise-mean relationship in mutated promoters

Short and simple sequences favored the emergence of N-helix phospho-ligand binding sites in the first enzymes

Primordial emergence of a nucleic acid-binding protein via phase separation and statistical ornithine-to-arginine conversion

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