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Microbial strain-level population structure and genetic diversity from metagenomes

Genome research, 2017-04, Vol.27 (4), p.626

2017

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MetaPhlAn2 for enhanced metagenomic taxonomic profiling

Nature methods, 2015-10, Vol.12 (10), p.902

2015

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Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

Cell host & microbe, 2018-07, Vol.24 (1), p.133-145.e5

2018

Volltextzugriff (PDF)

Strain-level microbial epidemiology and population genomics from shotgun metagenomics

Nature methods, 2016-05, Vol.13 (5), p.435

2016

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Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

Cell host & microbe, 2018-07, Vol.24 (1), p.146-154.e4

2018

Volltextzugriff (PDF)

Exploring Vertical Transmission of Bifidobacteria from Mother to Child

Applied and Environmental Microbiology, 2015-10, Vol.81 (20), p.7078-7087

2015

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Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates

Cell host & microbe, 2019-11, Vol.26 (5), p.680-690.e5

2019

Volltextzugriff (PDF)

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

Genome Biology, 2020-06, Vol.21 (1), p.138-138, Article 138

2020

Volltextzugriff (PDF)

Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

mSystems, 2017-01, Vol.2 (1)

2017

Volltextzugriff (PDF)

Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants

Cell reports (Cambridge), 2016-03, Vol.14 (12), p.2912-2924

2016

Volltextzugriff (PDF)

The influence of whole grain products and red meat on intestinal microbiota composition in normal weight adults: a randomized crossover intervention trial

PloS one, 2014-10, Vol.9 (10), p.e109606-e109606

2014

Volltextzugriff (PDF)

Characterisation of SalRAB a salicylic acid inducible positively regulated efflux system of Rhizobium leguminosarum bv viciae 3841

PloS one, 2014-08, Vol.9 (8), p.e103647

2014

Volltextzugriff (PDF)

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

NPJ biofilms and microbiomes, 2017-06, Vol.3 (1), p.14-12, Article 14

2017

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Profiling microbial strains in urban environments using metagenomic sequencing data

Biology direct, 2018-05, Vol.13 (1), p.9-9, Article 9

2018

Volltextzugriff (PDF)

Genomic and metagenomic insights into the microbial community of a thermal spring

Microbiome, 2019-01, Vol.7 (1), p.8-8, Article 8

2019

Volltextzugriff (PDF)

Metabolite quantification of faecal extracts from colorectal cancer patients and healthy controls

Oncotarget, 2018-09, Vol.9 (70), p.33278-33289

2018

Volltextzugriff (PDF)

Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter

Microbiome, 2021-09, Vol.9 (1), p.197-197, Article 197

2021

Volltextzugriff (PDF)

Regulatable Vectors for Environmental Gene Expression in Alphaproteobacteria

Applied and Environmental Microbiology, 2012-10, Vol.78 (19), p.7137-7140

2012

Volltextzugriff (PDF)

Progress towards understanding the fate of plasmids in bacterial communities

FEMS microbiology ecology, 2008-10, Vol.66 (1), p.3-13

2008

Volltextzugriff (PDF)

Correction: Metabolite quantification of faecal extracts from colorectal cancer patients and healthy controls

Oncotarget, 2019-02, Vol.10 (17), p.1660-1660

2019

Volltextzugriff (PDF)

Prevotella diversity, niches and interactions with the human host

Nature reviews. Microbiology, 2021-09, Vol.19 (9), p.585-599

2021

Volltextzugriff (PDF)

MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples

Nucleic acids research, 2017-01, Vol.45 (2), p.e7

2017

Volltextzugriff (PDF)

Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets

Cell host & microbe, 2019-03, Vol.25 (3), p.444-453.e3

2019

Volltextzugriff (PDF)

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

Cell, 2019-01, Vol.176 (3), p.649-662.e20

2019

Volltextzugriff (PDF)

Detecting contamination in viromes using ViromeQC

Nature biotechnology, 2019-12, Vol.37 (12), p.1408-1412

2019

Volltextzugriff (PDF)

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Microbial strain-level population structure and genetic diversity from metagenomes

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

Strain-level microbial epidemiology and population genomics from shotgun metagenomics

Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

Exploring Vertical Transmission of Bifidobacteria from Mother to Child

Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants

The influence of whole grain products and red meat on intestinal microbiota composition in normal weight adults: a randomized crossover intervention trial

Characterisation of SalRAB a salicylic acid inducible positively regulated efflux system of Rhizobium leguminosarum bv viciae 3841

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

Profiling microbial strains in urban environments using metagenomic sequencing data

Genomic and metagenomic insights into the microbial community of a thermal spring

Metabolite quantification of faecal extracts from colorectal cancer patients and healthy controls

Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter

Regulatable Vectors for Environmental Gene Expression in Alphaproteobacteria

Progress towards understanding the fate of plasmids in bacterial communities

Correction: Metabolite quantification of faecal extracts from colorectal cancer patients and healthy controls

Prevotella diversity, niches and interactions with the human host

MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples

Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

Detecting contamination in viromes using ViromeQC

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