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Med-BERT: pretrained contextualized embeddings on large-scale structured electronic health records for disease prediction

NPJ digital medicine, 2021-05, Vol.4 (1), p.86-86, Article 86

2021

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Social media and outbreaks of emerging infectious diseases: A systematic review of literature

American journal of infection control, 2018-09, Vol.46 (9), p.962-972

2018

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Gene2vec: distributed representation of genes based on co-expression

BMC genomics, 2019-02, Vol.20 (Suppl 1), p.82-82, Article 82

2019

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Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in UK Biobank

eLife, 2024-06, Vol.13

2024

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MetaRNN: differentiating rare pathogenic and rare benign missense SNVs and InDels using deep learning

Genome medicine, 2022-10, Vol.14 (1), p.115-14, Article 115

2022

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DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads

PloS one, 2017-06, Vol.12 (6), p.e0178751-e0178751

2017

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FiMAP: A fast identity-by-descent mapping test for biobank-scale cohorts

PLoS genetics, 2023-12, Vol.19 (12), p.e1011057

2023

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RaPID: ultra-fast, powerful, and accurate detection of segments identical by descent (IBD) in biobank-scale cohorts

Genome Biology, 2019-07, Vol.20 (1), p.143-15, Article 143

2019

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Tweeting about measles during stages of an outbreak: A semantic network approach to the framing of an emerging infectious disease

American journal of infection control, 2018-12, Vol.46 (12), p.1375-1380

2018

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Deep learning model for personalized prediction of positive MRSA culture using time-series electronic health records

Nature communications, 2024-03, Vol.15 (1), p.2036-2036, Article 2036

2024

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Collective effects of long-range DNA methylations predict gene expressions and estimate phenotypes in cancer

Scientific reports, 2020-03, Vol.10 (1), p.3920-3920, Article 3920

2020

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A Genome-Wide Association Study Reveals That Genes with Functions for Bone Development Are Associated with Body Conformation in Catfish

Marine biotechnology (New York, N.Y.), 2017-12, Vol.19 (6), p.570-578

2017

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Multi-allelic positional Burrows-Wheeler transform

BMC bioinformatics, 2019-06, Vol.20 (Suppl 11), p.279-279, Article 279

2019

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Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci

Human molecular genetics, 2015-08, Vol.24 (15), p.4464-4479

2015

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RAFFI: Accurate and fast familial relationship inference in large scale biobank studies using RaPID

PLoS genetics, 2021-01, Vol.17 (1), p.e1009315-e1009315

2021

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DRREP: deep ridge regressed epitope predictor

BMC genomics, 2017-10, Vol.18 (Suppl 6), p.676-676, Article 676

2017

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Public Perception Analysis of Tweets During the 2015 Measles Outbreak: Comparative Study Using Convolutional Neural Network Models

Journal of medical Internet research, 2018-07, Vol.20 (7), p.e236-e236

2018

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Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study

Journal of medical Internet research, 2020-07, Vol.22 (7), p.e16981-e16981

2020

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Epigenome-Wide Association Study of Fasting Measures of Glucose, Insulin, and HOMA-IR in the Genetics of Lipid Lowering Drugs and Diet Network Study

Diabetes (New York, N.Y.), 2014-02, Vol.63 (2), p.801-807

2014

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Epigenome-Wide Association Study of Fasting Blood Lipids in the Genetics of Lipid-Lowering Drugs and Diet Network Study

Circulation (New York, N.Y.), 2014-08, Vol.130 (7), p.565-572

2014

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Predicting gene expression using DNA methylation in three human populations

PeerJ (San Francisco, CA), 2019-05, Vol.7, p.e6757-e6757, Article e6757

2019

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The Bioenergetic Health Index: a new concept in mitochondrial translational research

Clinical science (1979), 2014-09, Vol.127 (6), p.367-373

2014

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Toward a standard formal semantic representation of the model card report

BMC bioinformatics, 2022-07, Vol.23 (Suppl 6), p.281-281, Article 281

2022

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Brain imaging endophenotypes by unsupervised deep learning

Alzheimer's & dementia, 2023-12, Vol.19 (S17), p.n/a

Zhi, Degui

2023

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Hierarchical generalized linear models for multiple groups of rare and common variants: jointly estimating group and individual-variant effects

PLoS genetics, 2011-12, Vol.7 (12), p.e1002382-e1002382

2011

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Med-BERT: pretrained contextualized embeddings on large-scale structured electronic health records for disease prediction

Social media and outbreaks of emerging infectious diseases: A systematic review of literature

Gene2vec: distributed representation of genes based on co-expression

Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in UK Biobank

MetaRNN: differentiating rare pathogenic and rare benign missense SNVs and InDels using deep learning

DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads

FiMAP: A fast identity-by-descent mapping test for biobank-scale cohorts

RaPID: ultra-fast, powerful, and accurate detection of segments identical by descent (IBD) in biobank-scale cohorts

Tweeting about measles during stages of an outbreak: A semantic network approach to the framing of an emerging infectious disease

Deep learning model for personalized prediction of positive MRSA culture using time-series electronic health records

Collective effects of long-range DNA methylations predict gene expressions and estimate phenotypes in cancer

A Genome-Wide Association Study Reveals That Genes with Functions for Bone Development Are Associated with Body Conformation in Catfish

Multi-allelic positional Burrows-Wheeler transform

Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci

RAFFI: Accurate and fast familial relationship inference in large scale biobank studies using RaPID

DRREP: deep ridge regressed epitope predictor

Public Perception Analysis of Tweets During the 2015 Measles Outbreak: Comparative Study Using Convolutional Neural Network Models

Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study

Epigenome-Wide Association Study of Fasting Measures of Glucose, Insulin, and HOMA-IR in the Genetics of Lipid Lowering Drugs and Diet Network Study

Epigenome-Wide Association Study of Fasting Blood Lipids in the Genetics of Lipid-Lowering Drugs and Diet Network Study

Predicting gene expression using DNA methylation in three human populations

The Bioenergetic Health Index: a new concept in mitochondrial translational research

Toward a standard formal semantic representation of the model card report

Brain imaging endophenotypes by unsupervised deep learning

Hierarchical generalized linear models for multiple groups of rare and common variants: jointly estimating group and individual-variant effects

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