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Gaussian-input Gaussian mixture model for representing density maps and atomic models

Journal of structural biology, 2018-07, Vol.203 (1), p.1-16

Kawabata, Takeshi

2018

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Detection of multiscale pockets on protein surfaces using mathematical morphology

Proteins, structure, function, and bioinformatics, 2010-04, Vol.78 (5), p.1195-1211

Kawabata, Takeshi

2010

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Structural Perspective of NR4A Nuclear Receptor Family and Their Potential Endogenous Ligands

Biological and Pharmaceutical Bulletin, 2024/03/01, Vol.47(3), pp.580-590

2024

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Detection of cave pockets in large molecules: Spaces into which internal probes can enter, but external probes from outside cannot

Biophysics and Physicobiology, 2019, Vol.16, pp.391-406

Kawabata, Takeshi

2019

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Mutational analysis of cutinase-like enzyme, Cut190, based on the 3D docking structure with model compounds of polyethylene terephthalate

Journal of bioscience and bioengineering, 2017-07, Vol.124 (1), p.28-35

2017

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Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures

Nucleic acids research, 2017-01, Vol.45 (D1), p.D282-D288

2017

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Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data

Protein science, 2022-01, Vol.31 (1), p.173-186

2022

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Difference of binding modes among three ligands to a receptor mSin3B corresponding to their inhibitory activities

Scientific reports, 2021-03, Vol.11 (1), p.6178-6178, Article 6178

2021

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Multimodal Structural Distribution of the p53 C‑Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to Extradisorder

Journal of chemical theory and computation, 2019-04, Vol.15 (4), p.2597-2607

2019

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New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)

Protein science, 2018-01, Vol.27 (1), p.95-102

2018

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A study to determine the number of expectation-maximization iterations for Gaussian-mixture-model-based speaker recognition

THE JOURNAL OF THE ACOUSTICAL SOCIETY OF JAPAN, 2022/11/01, Vol.78(11), pp.650-653

2022

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Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites

Proteins, structure, function, and bioinformatics, 2007-08, Vol.68 (2), p.516-529

2007

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Comparison of genetic structures and biochemical properties of tandem cutinase-type polyesterases from Thermobifida alba AHK119

Journal of bioscience and bioengineering, 2015-11, Vol.120 (5), p.491-497

2015

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Novel Acid Amplifier Generating Disulfonimide as Superacid

Journal of Photopolymer Science and Technology, 2017/12/20, Vol.30(6), pp.645-649

2017

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Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex Using a Gaussian Mixture Model

Biophysical journal, 2008-11, Vol.95 (10), p.4643-4658

Kawabata, Takeshi

2008

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Identification of ultra-rare disruptive variants in voltage-gated calcium channel-encoding genes in Japanese samples of schizophrenia and autism spectrum disorder

Translational psychiatry, 2022-02, Vol.12 (1), p.84-84, Article 84

2022

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Synthesis, Structural Analysis, and Reaction of 3-Aza-5-[7]orthocyclophyne

Chemistry letters, 2013-11, Vol.42 (11), p.1374-1376

2013

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Functional characterization of rare NRXN1 variants identified in autism spectrum disorders and schizophrenia

Journal of neurodevelopmental disorders, 2020-09, Vol.12 (1), p.25-25, Article 25

2020

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Gene expression and pathway analysis of CTNNB1 in cancer and stem cells

World journal of stem cells, 2016-11, Vol.8 (11), p.384-395

2016

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Rigid-Body Fitting of Atomic Models on 3D Density Maps of Electron Microscopy

Integrative Structural Biology with Hybrid Methods, p.219-235

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Catalytic mechanism of short ethoxy chain nonylphenol dehydrogenase belonging to a polyethylene glycol dehydrogenase group in the GMC oxidoreductase family

International journal of molecular sciences, 2013-01, Vol.14 (1), p.1218-1231

2013

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Synthesis and Structural Analysis of Nine-Membered Enyne Nitrogen Heterocycles

Heterocycles, 2015, Vol.90 (2), p.901

2015

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Protein structure comparison using the Markov transition model of evolution

Proteins, structure, function, and bioinformatics, 2000-10, Vol.41 (1), p.108-122

2000

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Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex using Gaussian Mixture Model

Biophysical journal, 2013-01, Vol.104 (2), p.352a-352a

Kawabata, Takeshi

2013

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Novel types of two-domain multi-copper oxidases: possible missing links in the evolution

FEBS letters, 2003-10, Vol.553 (3), p.239-244

2003

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Gaussian-input Gaussian mixture model for representing density maps and atomic models

Detection of multiscale pockets on protein surfaces using mathematical morphology

Structural Perspective of NR4A Nuclear Receptor Family and Their Potential Endogenous Ligands

Detection of cave pockets in large molecules: Spaces into which internal probes can enter, but external probes from outside cannot

Mutational analysis of cutinase-like enzyme, Cut190, based on the 3D docking structure with model compounds of polyethylene terephthalate

Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures

Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data

Difference of binding modes among three ligands to a receptor mSin3B corresponding to their inhibitory activities

Multimodal Structural Distribution of the p53 C‑Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to Extradisorder

New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)

A study to determine the number of expectation-maximization iterations for Gaussian-mixture-model-based speaker recognition

Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites

Comparison of genetic structures and biochemical properties of tandem cutinase-type polyesterases from Thermobifida alba AHK119

Novel Acid Amplifier Generating Disulfonimide as Superacid

Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex Using a Gaussian Mixture Model

Identification of ultra-rare disruptive variants in voltage-gated calcium channel-encoding genes in Japanese samples of schizophrenia and autism spectrum disorder

Synthesis, Structural Analysis, and Reaction of 3-Aza-5-[7]orthocyclophyne

Functional characterization of rare NRXN1 variants identified in autism spectrum disorders and schizophrenia

Gene expression and pathway analysis of CTNNB1 in cancer and stem cells

Rigid-Body Fitting of Atomic Models on 3D Density Maps of Electron Microscopy

Catalytic mechanism of short ethoxy chain nonylphenol dehydrogenase belonging to a polyethylene glycol dehydrogenase group in the GMC oxidoreductase family

Synthesis and Structural Analysis of Nine-Membered Enyne Nitrogen Heterocycles

Protein structure comparison using the Markov transition model of evolution

Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex using Gaussian Mixture Model

Novel types of two-domain multi-copper oxidases: possible missing links in the evolution

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