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Acquisition of prokaryotic genes by fungal genomes

Trends in genetics, 2010-01, Vol.26 (1), p.5-8

2010

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Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage

PLoS biology, 2015-08, Vol.13 (8), p.e1002220

2015

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Combining data from genomes, Y2H and 3D structure indicates that BolA is a reductase interacting with a glutaredoxin

FEBS letters, 2005-01, Vol.579 (3), p.591-596

2005

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Comparative Genomics and Transcriptomics To Analyze Fruiting Body Development in Filamentous Ascomycetes

Genetics (Austin), 2019-12, Vol.213 (4), p.1545-1563

2019

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Comparative genomics-based prediction of protein function

Methods in molecular biology (Clifton, N.J.), 2008, Vol.439, p.387

Gabaldón, Toni

2008

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Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

Scientific reports, 2015-06, Vol.5 (1), p.11571-11571, Article 11571

2015

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eggNOG v4.0: nested orthology inference across 3686 organisms

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D231-D239

2014

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Eukaryotic transporters for hydroxyderivatives of benzoic acid

Scientific reports, 2017-08, Vol.7 (1), p.8998-13, Article 8998

2017

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EvolClustDB: Exploring Eukaryotic Gene Clusters with Evolutionarily Conserved Genomic Neighbourhoods

Journal of molecular biology, 2023-07, Vol.435 (14), p.168013-168013, Article 168013

2023

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Evolution of the Peroxisomal Proteome

Proteomics of Peroxisomes, 2018, Vol.89, p.221-233

2018

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Evolutionary and functional patterns of shared gene neighbourhood in fungi

Nature microbiology, 2019-12, Vol.4 (12), p.2383-2392

2019

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Fungal evolution: diversity, taxonomy and phylogeny of the Fungi

Biological reviews of the Cambridge Philosophical Society, 2019-12, Vol.94 (6), p.2101-2137

2019

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Genome Assemblies of Two Rare Opportunistic Yeast Pathogens: Diutina rugosa (syn. Candida rugosa ) and Trichomonascus ciferrii (syn. Candida ciferrii )

G3 : genes - genomes - genetics, 2019-12, Vol.9 (12), p.3921-3927

2019

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genome of melon (Cucumis melo L.)

Proceedings of the National Academy of Sciences - PNAS, 2012-07, Vol.109 (29), p.11872-11877

2012

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The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)

Nature (London), 2014-01, Vol.505 (7484), p.546-549

2014

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The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties

International journal of food microbiology, 2012-07, Vol.157 (2), p.202-209

2012

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Genome, Transcriptome, and Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity

Molecular plant-microbe interactions, 2015-03, Vol.28 (3), p.232-248

2015

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High variability of mitochondrial gene order among fungi

Genome biology and evolution, 2014-02, Vol.6 (2), p.451-465

2014

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Horizontal acquisition of toxic alkaloid synthesis in a clade of plant associated fungi

Fungal genetics and biology, 2016-01, Vol.86, p.71-80

2016

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Lack of phylogenetic support for a supposed actinobacterial origin of peroxisomes

Gene, 2010-10, Vol.465 (1), p.61-65

2010

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Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry

Nature (London), 2016-03, Vol.531 (7592), p.101-104

2016

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Measuring guide-tree dependency of inferred gaps in progressive aligners

Bioinformatics, 2013-04, Vol.29 (8), p.1011-1017

2013

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Metabolic gene clusters encoding the enzymes of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans

FEMS yeast research, 2015-05, Vol.15 (3)

2015

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MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score

Nucleic acids research, 2011-03, Vol.39 (5), p.e32-e32

2011

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MICU1 Confers Protection from MCU-Dependent Manganese Toxicity

Cell reports (Cambridge), 2018-11, Vol.25 (6), p.1425-1435.e7

2018

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Acquisition of prokaryotic genes by fungal genomes

Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage

Combining data from genomes, Y2H and 3D structure indicates that BolA is a reductase interacting with a glutaredoxin

Comparative Genomics and Transcriptomics To Analyze Fruiting Body Development in Filamentous Ascomycetes

Comparative genomics-based prediction of protein function

Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

eggNOG v4.0: nested orthology inference across 3686 organisms

Eukaryotic transporters for hydroxyderivatives of benzoic acid

EvolClustDB: Exploring Eukaryotic Gene Clusters with Evolutionarily Conserved Genomic Neighbourhoods

Evolution of the Peroxisomal Proteome

Evolutionary and functional patterns of shared gene neighbourhood in fungi

Fungal evolution: diversity, taxonomy and phylogeny of the Fungi

Genome Assemblies of Two Rare Opportunistic Yeast Pathogens: Diutina rugosa (syn. Candida rugosa ) and Trichomonascus ciferrii (syn. Candida ciferrii )

genome of melon (Cucumis melo L.)

The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)

The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties

Genome, Transcriptome, and Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity

High variability of mitochondrial gene order among fungi

Horizontal acquisition of toxic alkaloid synthesis in a clade of plant associated fungi

Lack of phylogenetic support for a supposed actinobacterial origin of peroxisomes

Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry

Measuring guide-tree dependency of inferred gaps in progressive aligners

Metabolic gene clusters encoding the enzymes of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans

MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score

MICU1 Confers Protection from MCU-Dependent Manganese Toxicity

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