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Structure-Activity Predictions From Computational Mining of Protein Databases to Assist Modular Design of Antimicrobial Peptides

Frontiers in microbiology, 2022-04, Vol.13, p.812903

2022

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FunRes: resolving tissue-specific functional cell states based on a cell–cell communication network model

Briefings in bioinformatics, 2021-07, Vol.22 (4)

2021

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A computer-guided design tool to increase the efficiency of cellular conversions

Nature communications, 2021-03, Vol.12 (1), p.1659-1659, Article 1659

2021

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Epi-Impute: Single-Cell RNA-seq Imputation via Integration with Single-Cell ATAC-seq

International journal of molecular sciences, 2023-03, Vol.24 (7), p.6229

2023

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A 3D system to model human pancreas development and its reference single-cell transcriptome atlas identify signaling pathways required for progenitor expansion

Nature communications, 2021-05, Vol.12 (1), p.3144-3144, Article 3144

2021

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VSFlow: an open-source ligand-based virtual screening tool

Journal of cheminformatics, 2023-03, Vol.15 (1), p.40-40, Article 40

2023

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Resistance to Avapritinib in PDGFRA-Driven GIST Is Caused by Secondary Mutations in the PDGFRA Kinase Domain

Cancer discovery, 2021-01, Vol.11 (1), p.108-125

2021

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Antifungal Peptides of the AFP Family Revisited: Are These Cannibal Toxins?

Microorganisms (Basel), 2018-06, Vol.6 (2), p.50

2018

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A Penicillium rubens platform strain for secondary metabolite production

Scientific reports, 2020-05, Vol.10 (1), p.7630, Article 7630

2020

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New Cysteine Protease Inhibitors: Electrophilic (Het)arenes and Unexpected Prodrug Identification for the Trypanosoma Protease Rhodesain

Molecules (Basel, Switzerland), 2020-03, Vol.25 (6), p.1451

2020

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Membrane-Proximal Domain of a Disintegrin and Metalloprotease-17 Represents the Putative Molecular Switch of Its Shedding Activity Operated by Protein-disulfide Isomerase

Journal of the American Chemical Society, 2013-04, Vol.135 (15), p.5776-5781

2013

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Worms' Antimicrobial Peptides

Marine drugs, 2019-08, Vol.17 (9), p.512

2019

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Aspergillus niger as a cell factory for the production of pyomelanin, a molecule with UV-C radiation shielding activity

Frontiers in microbiology, 2023-07, Vol.14, p.1233740-1233740

2023

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Antimicrobial peptides and proteins of the horse--insights into a well-armed organism

Veterinary research (Paris), 2011-09, Vol.42 (1), p.98-98

2011

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A Transcriptome Meta-Analysis Proposes Novel Biological Roles for the Antifungal Protein AnAFP in Aspergillus niger

PloS one, 2016-11, Vol.11 (11), p.e0165755-e0165755

2016

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Prediction of Chromatin Accessibility in Gene-Regulatory Regions from Transcriptomics Data

Scientific reports, 2017-07, Vol.7 (1), p.4660-10, Article 4660

2017

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Breaking down barriers: comprehensive functional analysis of the Aspergillus niger chitin synthase repertoire

Fungal biology and biotechnology, 2024-03, Vol.11 (1), p.3-3, Article 3

2024

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A Catalogus Immune Muris of the mouse immune responses to diverse pathogens

Cell death & disease, 2021-08, Vol.12 (9), p.798-798, Article 798

2021

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Characterization and function of the first antibiotic isolated from a vent organism: the extremophile metazoan Alvinella pompejana

PloS one, 2014-04, Vol.9 (4), p.e95737

2014

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Hydramacin-1 in Action: Scrutinizing the Barnacle Model

Antimicrobial Agents and Chemotherapy, 2013-07, Vol.57 (7), p.2955-2966

2013

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Mechanical, physical and thermal properties of composite materials produced with the basidiomycete Fomes fomentarius

Fungal biology and biotechnology, 2023-12, Vol.10 (1), p.1-22, Article 22

2023

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Human β-Defensin 2 and β-Defensin 3 Chimeric Peptides Reveal the Structural Basis of the Pathogen Specificity of Their Parent Molecules

Antimicrobial Agents and Chemotherapy, 2011-03, Vol.55 (3), p.954-960

2011

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Species-Specific Differences in the Susceptibility of Fungi to the Antifungal Protein AFP Depend on C-3 Saturation of Glycosylceramides

mSphere, 2019-12, Vol.4 (6)

2019

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The Importance of Computational Modeling in Stem Cell Research

Trends in biotechnology (Regular ed.), 2021-02, Vol.39 (2), p.126-136

2021

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Iatrogenic Macular Hemorrhage after Dexamethasone Implant Injection

Klinische Monatsblätter für Augenheilkunde, 2024-04, Vol.241 (4), p.498-499

2024

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Structure-Activity Predictions From Computational Mining of Protein Databases to Assist Modular Design of Antimicrobial Peptides

FunRes: resolving tissue-specific functional cell states based on a cell–cell communication network model

A computer-guided design tool to increase the efficiency of cellular conversions

Epi-Impute: Single-Cell RNA-seq Imputation via Integration with Single-Cell ATAC-seq

A 3D system to model human pancreas development and its reference single-cell transcriptome atlas identify signaling pathways required for progenitor expansion

VSFlow: an open-source ligand-based virtual screening tool

Resistance to Avapritinib in PDGFRA-Driven GIST Is Caused by Secondary Mutations in the PDGFRA Kinase Domain

Antifungal Peptides of the AFP Family Revisited: Are These Cannibal Toxins?

A Penicillium rubens platform strain for secondary metabolite production

New Cysteine Protease Inhibitors: Electrophilic (Het)arenes and Unexpected Prodrug Identification for the Trypanosoma Protease Rhodesain

Membrane-Proximal Domain of a Disintegrin and Metalloprotease-17 Represents the Putative Molecular Switch of Its Shedding Activity Operated by Protein-disulfide Isomerase

Worms' Antimicrobial Peptides

Aspergillus niger as a cell factory for the production of pyomelanin, a molecule with UV-C radiation shielding activity

Antimicrobial peptides and proteins of the horse--insights into a well-armed organism

A Transcriptome Meta-Analysis Proposes Novel Biological Roles for the Antifungal Protein AnAFP in Aspergillus niger

Prediction of Chromatin Accessibility in Gene-Regulatory Regions from Transcriptomics Data

Breaking down barriers: comprehensive functional analysis of the Aspergillus niger chitin synthase repertoire

A Catalogus Immune Muris of the mouse immune responses to diverse pathogens

Characterization and function of the first antibiotic isolated from a vent organism: the extremophile metazoan Alvinella pompejana

Hydramacin-1 in Action: Scrutinizing the Barnacle Model

Mechanical, physical and thermal properties of composite materials produced with the basidiomycete Fomes fomentarius

Human β-Defensin 2 and β-Defensin 3 Chimeric Peptides Reveal the Structural Basis of the Pathogen Specificity of Their Parent Molecules

Species-Specific Differences in the Susceptibility of Fungi to the Antifungal Protein AFP Depend on C-3 Saturation of Glycosylceramides

The Importance of Computational Modeling in Stem Cell Research

Iatrogenic Macular Hemorrhage after Dexamethasone Implant Injection

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