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GapBlaster-A Graphical Gap Filler for Prokaryote Genomes

PloS one, 2016-05, Vol.11 (5), p.e0155327-e0155327

2016

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JNSViewer-A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures

PloS one, 2017-06, Vol.12 (6), p.e0179040-e0179040

2017

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RASCL: Rapid Assessment of Selection in CLades through molecular sequence analysis

PloS one, 2022-11, Vol.17 (11), p.e0275623

2022

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Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, Indonesia

PeerJ (San Francisco, CA), 2020-12, Vol.8, p.e10575-e10575, Article e10575

2020

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Novel plasmids and resistance phenotypes in Yersinia pestis: unique plasmid inventory of strain Java 9 mediates high levels of arsenic resistance

PloS one, 2012-03, Vol.7 (3), p.e32911

2012

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GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research

PloS one, 2016-04, Vol.11 (4), p.e0152686-e0152686

2016

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Plio-Pleistocene phylogeography of the Southeast Asian Blue Panchax killifish, Aplocheilus panchax

PloS one, 2017-07, Vol.12 (7), p.e0179557-e0179557

2017

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TreeVector: scalable, interactive, phylogenetic trees for the web

PloS one, 2010-01, Vol.5 (1), p.e8934-e8934

2010

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An integrated SNP mining and utilization (ISMU) pipeline for next generation sequencing data

PloS one, 2014-07, Vol.9 (7), p.e101754-e101754

2014

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Infinity: An In-Silico Tool for Genome-Wide Prediction of Specific DNA Matrices in miRNA Genomic Loci

PloS one, 2016-04, Vol.11 (4), p.e0153658-e0153658

2016

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Tn-seq explorer: a tool for analysis of high-throughput sequencing data of transposon mutant libraries

PloS one, 2015-05, Vol.10 (5), p.e0126070-e0126070

2015

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High-Throughput Tabular Data Processor - Platform independent graphical tool for processing large data sets

PloS one, 2018-02, Vol.13 (2), p.e0192858-e0192858

2018

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CAGO: a software tool for dynamic visual comparison and correlation measurement of genome organization

PloS one, 2011-11, Vol.6 (11), p.e27080-e27080

2011

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iPiG: integrating peptide spectrum matches into genome browser visualizations

PloS one, 2012-12, Vol.7 (12), p.e50246-e50246

2012

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Genometa--a fast and accurate classifier for short metagenomic shotgun reads

PloS one, 2012-08, Vol.7 (8), p.e41224-e41224

2012

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An absolute index (Ab-index) to measure a researcher's useful contributions and productivity

PloS one, 2013-12, Vol.8 (12), p.e84334-e84334

2013

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Genomic evolution of 11 type strains within family Planctomycetaceae

PloS one, 2014-01, Vol.9 (1), p.e86752-e86752

2014

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BG7: a new approach for bacterial genome annotation designed for next generation sequencing data

PloS one, 2012-11, Vol.7 (11), p.e49239-e49239

2012

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DockerBIO: web application for efficient use of bioinformatics Docker images

PeerJ (San Francisco, CA), 2018-11, Vol.6, p.e5954-e5954, Article e5954

2018

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HSRA: Hadoop-based spliced read aligner for RNA sequencing data

PloS one, 2018-07, Vol.13 (7), p.e0201483-e0201483

2018

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LipidHome: a database of theoretical lipids optimized for high throughput mass spectrometry lipidomics

PloS one, 2013-05, Vol.8 (5), p.e61951-e61951

2013

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ZODET: software for the identification, analysis and visualisation of outlier genes in microarray expression data

PloS one, 2014-01, Vol.9 (1), p.e81123-e81123

2014

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TCGA Expedition: A Data Acquisition and Management System for TCGA Data

PloS one, 2016-10, Vol.11 (10), p.e0165395-e0165395

2016

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An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis

PloS one, 2020-11, Vol.15 (11), p.e0241038-e0241038

2020

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Genome-based Salmonella serotyping as the new gold standard

Scientific reports, 2020-03, Vol.10 (1), p.4333-4333, Article 4333

2020

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GapBlaster-A Graphical Gap Filler for Prokaryote Genomes

JNSViewer-A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures

RASCL: Rapid Assessment of Selection in CLades through molecular sequence analysis

Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, Indonesia

Novel plasmids and resistance phenotypes in Yersinia pestis: unique plasmid inventory of strain Java 9 mediates high levels of arsenic resistance

GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research

Plio-Pleistocene phylogeography of the Southeast Asian Blue Panchax killifish, Aplocheilus panchax

TreeVector: scalable, interactive, phylogenetic trees for the web

An integrated SNP mining and utilization (ISMU) pipeline for next generation sequencing data

Infinity: An In-Silico Tool for Genome-Wide Prediction of Specific DNA Matrices in miRNA Genomic Loci

Tn-seq explorer: a tool for analysis of high-throughput sequencing data of transposon mutant libraries

High-Throughput Tabular Data Processor - Platform independent graphical tool for processing large data sets

CAGO: a software tool for dynamic visual comparison and correlation measurement of genome organization

iPiG: integrating peptide spectrum matches into genome browser visualizations

Genometa--a fast and accurate classifier for short metagenomic shotgun reads

An absolute index (Ab-index) to measure a researcher's useful contributions and productivity

Genomic evolution of 11 type strains within family Planctomycetaceae

BG7: a new approach for bacterial genome annotation designed for next generation sequencing data

DockerBIO: web application for efficient use of bioinformatics Docker images

HSRA: Hadoop-based spliced read aligner for RNA sequencing data

LipidHome: a database of theoretical lipids optimized for high throughput mass spectrometry lipidomics

ZODET: software for the identification, analysis and visualisation of outlier genes in microarray expression data

TCGA Expedition: A Data Acquisition and Management System for TCGA Data

An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis

Genome-based Salmonella serotyping as the new gold standard

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