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Detection of multiscale pockets on protein surfaces using mathematical morphology

Proteins, structure, function, and bioinformatics, 2010-04, Vol.78 (5), p.1195-1211

Kawabata, Takeshi

2010

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Gaussian-input Gaussian mixture model for representing density maps and atomic models

Journal of structural biology, 2018-07, Vol.203 (1), p.1-16

Kawabata, Takeshi

2018

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Current knowledge on enzymatic PET degradation and its possible application to waste stream management and other fields

Applied microbiology and biotechnology, 2019-06, Vol.103 (11), p.4253-4268

2019

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HOMCOS: an updated server to search and model complex 3D structures

Journal of structural and functional genomics, 2016-12, Vol.17 (4), p.83-99

Kawabata, Takeshi

2016

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Build-Up Algorithm for Atomic Correspondence between Chemical Structures

Journal of chemical information and modeling, 2011-08, Vol.51 (8), p.1775-1787

Kawabata, Takeshi

2011

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Current State and Perspectives Related to the Polyethylene Terephthalate Hydrolases Available for Biorecycling

ACS sustainable chemistry & engineering, 2020-06, Vol.8 (24), p.8894-8908

2020

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Structural Perspective of NR4A Nuclear Receptor Family and Their Potential Endogenous Ligands

Biological and Pharmaceutical Bulletin, 2024/03/01, Vol.47(3), pp.580-590

2024

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Detection of cave pockets in large molecules: Spaces into which internal probes can enter, but external probes from outside cannot

Biophysics and Physicobiology, 2019, Vol.16, pp.391-406

Kawabata, Takeshi

2019

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The Biological Structure Model Archive (BSM-Arc): an archive for in silico models and simulations

Biophysical reviews, 2020-04, Vol.12 (2), p.371-375

2020

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Mutational analysis of cutinase-like enzyme, Cut190, based on the 3D docking structure with model compounds of polyethylene terephthalate

Journal of bioscience and bioengineering, 2017-07, Vol.124 (1), p.28-35

2017

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Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures

Nucleic acids research, 2017-01, Vol.45 (D1), p.D282-D288

2017

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Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data

Protein science, 2022-01, Vol.31 (1), p.173-186

2022

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3D Flexible Alignment Using 2D Maximum Common Substructure: Dependence of Prediction Accuracy on Target-Reference Chemical Similarity

Journal of chemical information and modeling, 2014-07, Vol.54 (7), p.1850-1863

2014

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Omokage search: shape similarity search service for biomolecular structures in both the PDB and EMDB

Bioinformatics, 2016-02, Vol.32 (4), p.619-620

2016

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Difference of binding modes among three ligands to a receptor mSin3B corresponding to their inhibitory activities

Scientific reports, 2021-03, Vol.11 (1), p.6178-6178, Article 6178

2021

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Biochemical and genetic analysis of a cutinase-type polyesterase from a thermophilic Thermobifida alba AHK119

Applied microbiology and biotechnology, 2012-07, Vol.95 (2), p.419-430

2012

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Multimodal Structural Distribution of the p53 C‑Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to Extradisorder

Journal of chemical theory and computation, 2019-04, Vol.15 (4), p.2597-2607

2019

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New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)

Protein science, 2018-01, Vol.27 (1), p.95-102

2018

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A study to determine the number of expectation-maximization iterations for Gaussian-mixture-model-based speaker recognition

THE JOURNAL OF THE ACOUSTICAL SOCIETY OF JAPAN, 2022/11/01, Vol.78(11), pp.650-653

2022

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Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites

Proteins, structure, function, and bioinformatics, 2007-08, Vol.68 (2), p.516-529

2007

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Comparison of genetic structures and biochemical properties of tandem cutinase-type polyesterases from Thermobifida alba AHK119

Journal of bioscience and bioengineering, 2015-11, Vol.120 (5), p.491-497

2015

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Novel Acid Amplifier Generating Disulfonimide as Superacid

Journal of Photopolymer Science and Technology, 2017/12/20, Vol.30(6), pp.645-649

2017

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Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex Using a Gaussian Mixture Model

Biophysical journal, 2008-11, Vol.95 (10), p.4643-4658

Kawabata, Takeshi

2008

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Identification of ultra-rare disruptive variants in voltage-gated calcium channel-encoding genes in Japanese samples of schizophrenia and autism spectrum disorder

Translational psychiatry, 2022-02, Vol.12 (1), p.84-84, Article 84

2022

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Functional characterization of rare NRXN1 variants identified in autism spectrum disorders and schizophrenia

Journal of neurodevelopmental disorders, 2020-09, Vol.12 (1), p.25-25, Article 25

2020

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Detection of multiscale pockets on protein surfaces using mathematical morphology

Gaussian-input Gaussian mixture model for representing density maps and atomic models

Current knowledge on enzymatic PET degradation and its possible application to waste stream management and other fields

HOMCOS: an updated server to search and model complex 3D structures

Build-Up Algorithm for Atomic Correspondence between Chemical Structures

Current State and Perspectives Related to the Polyethylene Terephthalate Hydrolases Available for Biorecycling

Structural Perspective of NR4A Nuclear Receptor Family and Their Potential Endogenous Ligands

Detection of cave pockets in large molecules: Spaces into which internal probes can enter, but external probes from outside cannot

The Biological Structure Model Archive (BSM-Arc): an archive for in silico models and simulations

Mutational analysis of cutinase-like enzyme, Cut190, based on the 3D docking structure with model compounds of polyethylene terephthalate

Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures

Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data

3D Flexible Alignment Using 2D Maximum Common Substructure: Dependence of Prediction Accuracy on Target-Reference Chemical Similarity

Omokage search: shape similarity search service for biomolecular structures in both the PDB and EMDB

Difference of binding modes among three ligands to a receptor mSin3B corresponding to their inhibitory activities

Biochemical and genetic analysis of a cutinase-type polyesterase from a thermophilic Thermobifida alba AHK119

Multimodal Structural Distribution of the p53 C‑Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to Extradisorder

New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)

A study to determine the number of expectation-maximization iterations for Gaussian-mixture-model-based speaker recognition

Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites

Comparison of genetic structures and biochemical properties of tandem cutinase-type polyesterases from Thermobifida alba AHK119

Novel Acid Amplifier Generating Disulfonimide as Superacid

Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex Using a Gaussian Mixture Model

Identification of ultra-rare disruptive variants in voltage-gated calcium channel-encoding genes in Japanese samples of schizophrenia and autism spectrum disorder

Functional characterization of rare NRXN1 variants identified in autism spectrum disorders and schizophrenia

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