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Complex heatmaps reveal patterns and correlations in multidimensional genomic data

Bioinformatics (Oxford, England), 2016-09, Vol.32 (18), p.2847-2849

2016

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Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites

Briefings in bioinformatics, 2018-09, Vol.19 (5), p.1022-1034

2018

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Empirical comparison of structure-based pathway methods

Briefings in bioinformatics, 2016-03, Vol.17 (2), p.336-345

2016

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Network-constrained regularization and variable selection for analysis of genomic data

Bioinformatics, 2008-05, Vol.24 (9), p.1175-1182

2008

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Quercetin attenuates high glucose-induced injury in human retinal pigment epithelial cell line ARPE-19 by up-regulation of miR-29b

Journal of biochemistry (Tokyo), 2020-05, Vol.167 (5), p.495

2020

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GSEA-InContext: identifying novel and common patterns in expression experiments

Bioinformatics, 2018-07, Vol.34 (13), p.i555-i564

2018

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A review of network-based approaches to drug repositioning

Briefings in bioinformatics, 2018-09, Vol.19 (5), p.878-892

2018

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Selenium biochemistry and its role for human health

Metallomics, 2014-01, Vol.6 (1), p.25-54

2014

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Reactome diagram viewer: data structures and strategies to boost performance

Bioinformatics, 2018-04, Vol.34 (7), p.1208-1214

2018

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Genetic and biochemical investigations on bacterial catabolic pathways for lignin-derived aromatic compounds

Bioscience, biotechnology, and biochemistry, 2007-01, Vol.71 (1), p.1-15

2007

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CHRR: coordinate hit-and-run with rounding for uniform sampling of constraint-based models

Bioinformatics (Oxford, England), 2017-06, Vol.33 (11), p.1741-1743

2017

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DyNet: visualization and analysis of dynamic molecular interaction networks

Bioinformatics (Oxford, England), 2016-09, Vol.32 (17), p.2713-2715

2016

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The elemental role of iron in DNA synthesis and repair

Metallomics, 2017-11, Vol.9 (11), p.1483

2017

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Exploring the structure and function of temporal networks with dynamic graphlets

Bioinformatics (Oxford, England), 2015-06, Vol.31 (12), p.i171-i180

2015

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MetPA: a web-based metabolomics tool for pathway analysis and visualization

Bioinformatics, 2010-09, Vol.26 (18), p.2342-2344

2010

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Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data

Bioinformatics, 2012-02, Vol.28 (3), p.373-380

2012

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Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization

Bioinformatics (Oxford, England), 2016-09, Vol.32 (17), p.i455-i463

2016

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Targeting GRP78 enhances the sensitivity of HOS osteosarcoma cells to pyropheophorbide-α methyl ester-mediated photodynamic therapy via the Wnt/β-catenin signaling pathway

Acta biochimica et biophysica Sinica, 2021-10, Vol.53 (10), p.1387-1397

2021

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Differential network analysis for the identification of condition-specific pathway activity and regulation

Bioinformatics, 2013-07, Vol.29 (14), p.1776-1785

2013

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MIMOSA2: a metabolic network-based tool for inferring mechanism-supported relationships in microbiome‐metabolome data

Bioinformatics, 2022-03, Vol.38 (6), p.1615-1623

2022

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FogLight: an efficient matrix-based approach to construct metabolic pathways by search space reduction

Bioinformatics, 2016-02, Vol.32 (3), p.398-408

2016

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Vitamin Deficiencies in Humans: Can Plant Science Help?

The Plant cell, 2012-02, Vol.24 (2), p.395-414

2012

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Sphingolipids Containing Very-Long-Chain Fatty Acids Define a Secretory Pathway for Specific Polar Plasma Membrane Protein Targeting in Arabidopsis

The Plant cell, 2011-06, Vol.23 (6), p.2362-2378

2011

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ConceptMetab: exploring relationships among metabolite sets to identify links among biomedical concepts

Bioinformatics, 2016-05, Vol.32 (10), p.1536-1543

2016

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Quercetin inhibits the proliferation of multiple myeloma cells by upregulating PTPRR expression

Acta biochimica et biophysica Sinica, 2021-11, Vol.53 (11), p.1505-1515

2021

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Complex heatmaps reveal patterns and correlations in multidimensional genomic data

Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites

Empirical comparison of structure-based pathway methods

Network-constrained regularization and variable selection for analysis of genomic data

Quercetin attenuates high glucose-induced injury in human retinal pigment epithelial cell line ARPE-19 by up-regulation of miR-29b

GSEA-InContext: identifying novel and common patterns in expression experiments

A review of network-based approaches to drug repositioning

Selenium biochemistry and its role for human health

Reactome diagram viewer: data structures and strategies to boost performance

Genetic and biochemical investigations on bacterial catabolic pathways for lignin-derived aromatic compounds

CHRR: coordinate hit-and-run with rounding for uniform sampling of constraint-based models

DyNet: visualization and analysis of dynamic molecular interaction networks

The elemental role of iron in DNA synthesis and repair

Exploring the structure and function of temporal networks with dynamic graphlets

MetPA: a web-based metabolomics tool for pathway analysis and visualization

Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data

Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization

Targeting GRP78 enhances the sensitivity of HOS osteosarcoma cells to pyropheophorbide-α methyl ester-mediated photodynamic therapy via the Wnt/β-catenin signaling pathway

Differential network analysis for the identification of condition-specific pathway activity and regulation

MIMOSA2: a metabolic network-based tool for inferring mechanism-supported relationships in microbiome‐metabolome data

FogLight: an efficient matrix-based approach to construct metabolic pathways by search space reduction

Vitamin Deficiencies in Humans: Can Plant Science Help?

Sphingolipids Containing Very-Long-Chain Fatty Acids Define a Secretory Pathway for Specific Polar Plasma Membrane Protein Targeting in Arabidopsis

ConceptMetab: exploring relationships among metabolite sets to identify links among biomedical concepts

Quercetin inhibits the proliferation of multiple myeloma cells by upregulating PTPRR expression

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