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Software for systems biology: from tools to integrated platforms

Nature reviews. Genetics, 2011-12, Vol.12 (12), p.821-832

2011

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Potential Functional Restoration of Corneal Endothelial Cells in Fuchs Endothelial Corneal Dystrophy by ROCK Inhibitor (Ripasudil)

American journal of ophthalmology, 2021-04, Vol.224, p.185-199

2021

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Gankyrin drives metabolic reprogramming to promote tumorigenesis, metastasis and drug resistance through activating β-catenin/c-Myc signaling in human hepatocellular carcinoma

Cancer letters, 2019-02, Vol.443, p.34-46

2019

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Aurora kinase A stabilizes FOXM1 to enhance paclitaxel resistance in triple‐negative breast cancer

Journal of cellular and molecular medicine, 2019-09, Vol.23 (9), p.6442-6453

2019

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Molecular mechanism of Aurora A kinase autophosphorylation and its allosteric activation by TPX2

eLife, 2014-05, Vol.3, p.e02667-e02667

2014

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The chloroplast 2-cysteine peroxiredoxin functions as thioredoxin oxidase in redox regulation of chloroplast metabolism

eLife, 2018-10, Vol.7

2018

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Single-cell sequencing reveals karyotype heterogeneity in murine and human malignancies

Genome Biology, 2016-05, Vol.17 (1), p.115-115, Article 115

2016

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Cell Origin Dictates Programming of Resident versus Recruited Macrophages during Acute Lung Injury

American journal of respiratory cell and molecular biology, 2017-09, Vol.57 (3), p.294-306

2017

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PARP inhibitors combined with ionizing radiation induce different effects in melanoma cells and healthy fibroblasts

BMC cancer, 2020-08, Vol.20 (1), p.775-10, Article 775

2020

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Genome-wide identification of transcription factors that are critical to non-small cell lung cancer

Cancer letters, 2018-10, Vol.434, p.132-143

2018

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CPF impedes cell cycle re‐entry of quiescent lung cancer cells through transcriptional suppression of FACT and c‐MYC

Journal of cellular and molecular medicine, 2020-02, Vol.24 (3), p.2229-2239

2020

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Oxidative stress-induced downregulation of glycogen synthase kinase 3 beta in fetal membranes promotes cellular senescence

Biology of reproduction, 2019-11, Vol.101 (5), p.1018-1030

2019

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IKAP: A heuristic framework for inference of kinase activities from Phosphoproteomics data

Bioinformatics, 2016-02, Vol.32 (3), p.424-431

2016

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Cuproptosis identifies respiratory subtype of renal cancer that confers favorable prognosis

Apoptosis (London), 2022-12, Vol.27 (11-12), p.1004-1014

2022

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Clinicopathological characterisation of MTAP alterations in gastrointestinal cancers

Journal of clinical pathology, 2024-02, p.jcp-2023-209341

2024

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STK39 is a novel kinase contributing to the progression of hepatocellular carcinoma by the PLK1/ERK signaling pathway

Theranostics, 2021, Vol.11 (5), p.2108-2122

2021

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Expression and correlation analysis of Skp2 and CBX7 in cervical cancer

Journal of clinical pathology, 2022-12, Vol.75 (12), p.851-856

2022

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PI3K blockage synergizes with PLK1 inhibition preventing endoreduplication and enhancing apoptosis in anaplastic thyroid cancer

Cancer letters, 2018-12, Vol.439, p.56-65

2018

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Using ToxCast™ Data to Reconstruct Dynamic Cell State Trajectories and Estimate Toxicological Points of Departure

Environmental health perspectives, 2016-07, Vol.124 (7), p.910-919

2016

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Punctuated evolution and transitional hybrid network in an ancestral cell cycle of fungi

eLife, 2016-05, Vol.5

2016

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CDK9-55 guides the anaphase-promoting complex/cyclosome (APC/C) in choosing the DNA repair pathway choice

Oncogene, 2024-04, Vol.43 (17), p.1263-1273

2024

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Systemic alterations of tricarboxylic acid cycle enzymes in Alzheimer's disease

Frontiers in neuroscience, 2023-07, Vol.17, p.1206688-1206688

2023

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Primary high-grade serous ovarian cancer cells are sensitive to senescence induced by carboplatin and paclitaxel in vitro

Cellular & molecular biology letters, 2021-10, Vol.26 (1), p.44-44, Article 44

2021

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Targeting CXCR4 abrogates resistance to trastuzumab by blocking cell cycle progression and synergizes with docetaxel in breast cancer treatment

Breast cancer research : BCR, 2023-06, Vol.25 (1), p.62-62, Article 62

2023

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An order-to-disorder structural switch activates the FoxM1 transcription factor

eLife, 2019-05, Vol.8

2019

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Software for systems biology: from tools to integrated platforms

Potential Functional Restoration of Corneal Endothelial Cells in Fuchs Endothelial Corneal Dystrophy by ROCK Inhibitor (Ripasudil)

Gankyrin drives metabolic reprogramming to promote tumorigenesis, metastasis and drug resistance through activating β-catenin/c-Myc signaling in human hepatocellular carcinoma

Aurora kinase A stabilizes FOXM1 to enhance paclitaxel resistance in triple‐negative breast cancer

Molecular mechanism of Aurora A kinase autophosphorylation and its allosteric activation by TPX2

The chloroplast 2-cysteine peroxiredoxin functions as thioredoxin oxidase in redox regulation of chloroplast metabolism

Single-cell sequencing reveals karyotype heterogeneity in murine and human malignancies

Cell Origin Dictates Programming of Resident versus Recruited Macrophages during Acute Lung Injury

PARP inhibitors combined with ionizing radiation induce different effects in melanoma cells and healthy fibroblasts

Genome-wide identification of transcription factors that are critical to non-small cell lung cancer

CPF impedes cell cycle re‐entry of quiescent lung cancer cells through transcriptional suppression of FACT and c‐MYC

Oxidative stress-induced downregulation of glycogen synthase kinase 3 beta in fetal membranes promotes cellular senescence

IKAP: A heuristic framework for inference of kinase activities from Phosphoproteomics data

Cuproptosis identifies respiratory subtype of renal cancer that confers favorable prognosis

Clinicopathological characterisation of MTAP alterations in gastrointestinal cancers

STK39 is a novel kinase contributing to the progression of hepatocellular carcinoma by the PLK1/ERK signaling pathway

Expression and correlation analysis of Skp2 and CBX7 in cervical cancer

PI3K blockage synergizes with PLK1 inhibition preventing endoreduplication and enhancing apoptosis in anaplastic thyroid cancer

Using ToxCast™ Data to Reconstruct Dynamic Cell State Trajectories and Estimate Toxicological Points of Departure

Punctuated evolution and transitional hybrid network in an ancestral cell cycle of fungi

CDK9-55 guides the anaphase-promoting complex/cyclosome (APC/C) in choosing the DNA repair pathway choice

Systemic alterations of tricarboxylic acid cycle enzymes in Alzheimer's disease

Primary high-grade serous ovarian cancer cells are sensitive to senescence induced by carboplatin and paclitaxel in vitro

Targeting CXCR4 abrogates resistance to trastuzumab by blocking cell cycle progression and synergizes with docetaxel in breast cancer treatment

An order-to-disorder structural switch activates the FoxM1 transcription factor

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