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WASP: allele-specific software for robust molecular quantitative trait locus discovery

Nature methods, 2015-11, Vol.12 (11), p.1061-1063

2015

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Widespread genomic signatures of natural selection in hominid evolution

PLoS genetics, 2009-05, Vol.5 (5), p.e1000471-e1000471

2009

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A Genomic Map of the Effects of Linked Selection in Drosophila

PLoS genetics, 2016-08, Vol.12 (8), p.e1006130

2016

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Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels

PLoS genetics, 2014-09, Vol.10 (9), p.e1004663-e1004663

2014

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Allele-specific expression reveals genes with recurrent cis-regulatory alterations in high-risk neuroblastoma

Genome Biology, 2022-03, Vol.23 (1), p.71-71, Article 71

2022

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Controls of nucleosome positioning in the human genome

PLoS genetics, 2012-11, Vol.8 (11), p.e1003036-e1003036

2012

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Leveraging Allele-Specific Expression for Therapeutic Response Gene Discovery in Glioblastoma

Cancer research (Chicago, Ill.), 2022-02, Vol.82 (3), p.377-390

2022

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Discovering functional sequences with RELICS, an analysis method for CRISPR screens

PLoS computational biology, 2020-09, Vol.16 (9), p.e1008194-e1008194

2020

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A comparison of nucleosome organization in Drosophila cell lines

PloS one, 2017-06, Vol.12 (6), p.e0178590-e0178590

2017

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Genomic signatures of germline gene expression

Genome research, 2010-11, Vol.20 (11), p.1503-1511

2010

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Identification of Genetic Variants That Affect Histone Modifications in Human Cells

Science (American Association for the Advancement of Science), 2013-11, Vol.342 (6159), p.747-749

2013

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The genome shows its sensitive side

Nature methods, 2014-01, Vol.11 (1), p.39-40

2014

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Brain cell type-specific enhancer-promoter interactome maps and disease - risk association

Science (American Association for the Advancement of Science), 2019-11, Vol.366 (6469), p.1134-1139

2019

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Structural variants drive context-dependent oncogene activation in cancer

Nature (London), 2022-12, Vol.612 (7940), p.564-572

2022

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Discovering single nucleotide variants and indels from bulk and single-cell ATAC-seq

Nucleic acids research, 2021-08, Vol.49 (14), p.7986-7994

2021

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Single-nucleus genomics in outbred rats with divergent cocaine addiction-like behaviors reveals changes in amygdala GABAergic inhibition

Nature neuroscience, 2023-11, Vol.26 (11), p.1868-1879

2023

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Author Correction: Single-nucleus genomics in outbred rats with divergent cocaine addiction-like behaviors reveals changes in amygdala GABAergic inhibition

Nature neuroscience, 2023-11, Vol.26 (11), p.2035-2035

2023

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Systematic discovery and functional dissection of enhancers needed for cancer cell fitness and proliferation

Cell reports (Cambridge), 2022-11, Vol.41 (6), p.111630-111630, Article 111630

2022

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GeneComber: combining outputs of gene prediction programs for improved results

Bioinformatics, 2003-07, Vol.19 (10), p.1296-1297

2003

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Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection

Genome research, 2011-10, Vol.21 (10), p.1686-1694

2011

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Analysis of single-cell CRISPR perturbations indicates that enhancers predominantly act multiplicatively

Cell genomics, 2024-10, p.100672, Article 100672

2024

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The chromatin architectural proteins HMGD1 and H1 bind reciprocally and have opposite effects on chromatin structure and gene regulation

BMC genomics, 2014-02, Vol.15 (1), p.92-92, Article 92

2014

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Impact of genetic polymorphisms on human immune cell gene expression

The Journal of immunology (1950), 2019-05, Vol.202 (1_Supplement), p.182-182.27

2019

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Database of Immune Cell EQTLs, Expression, Epigenomics

The Journal of immunology (1950), 2019-05, Vol.202 (1_Supplement), p.131-131.18

2019

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WASP: allele-specific software for robust molecular quantitative trait locus discovery

Widespread genomic signatures of natural selection in hominid evolution

A Genomic Map of the Effects of Linked Selection in Drosophila

Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels

Allele-specific expression reveals genes with recurrent cis-regulatory alterations in high-risk neuroblastoma

Controls of nucleosome positioning in the human genome

Leveraging Allele-Specific Expression for Therapeutic Response Gene Discovery in Glioblastoma

Discovering functional sequences with RELICS, an analysis method for CRISPR screens

A comparison of nucleosome organization in Drosophila cell lines

Genomic signatures of germline gene expression

Identification of Genetic Variants That Affect Histone Modifications in Human Cells

The genome shows its sensitive side

Brain cell type-specific enhancer-promoter interactome maps and disease - risk association

Structural variants drive context-dependent oncogene activation in cancer

Discovering single nucleotide variants and indels from bulk and single-cell ATAC-seq

Single-nucleus genomics in outbred rats with divergent cocaine addiction-like behaviors reveals changes in amygdala GABAergic inhibition

Author Correction: Single-nucleus genomics in outbred rats with divergent cocaine addiction-like behaviors reveals changes in amygdala GABAergic inhibition

Systematic discovery and functional dissection of enhancers needed for cancer cell fitness and proliferation

GeneComber: combining outputs of gene prediction programs for improved results

Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection

Analysis of single-cell CRISPR perturbations indicates that enhancers predominantly act multiplicatively

The chromatin architectural proteins HMGD1 and H1 bind reciprocally and have opposite effects on chromatin structure and gene regulation

Impact of genetic polymorphisms on human immune cell gene expression

Database of Immune Cell EQTLs, Expression, Epigenomics

An overview of Ensembl

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