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Distinct Properties of Cell-Type-Specific and Shared Transcription Factor Binding Sites

Molecular cell, 2013-10, Vol.52 (1), p.25-36

2013

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Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements

Nature methods, 2015-12, Vol.12 (12), p.1143

2015

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Clustering gene expression time series data using an infinite Gaussian process mixture model

PLoS computational biology, 2018-01, Vol.14 (1), p.e1005896

2018

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Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation

PLoS genetics, 2011-08, Vol.7 (8), p.e1002228-e1002228

2011

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Dynamic DNA methylation across diverse human cell lines and tissues

Genome research, 2013-03, Vol.23 (3), p.555

2013

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Targeted Epigenetic Remodeling of Endogenous Loci by CRISPR/Cas9-Based Transcriptional Activators Directly Converts Fibroblasts to Neuronal Cells

Cell stem cell, 2016-09, Vol.19 (3), p.406-414

2016

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Genomic approaches for understanding the genetics of complex disease

Genome research, 2015-10, Vol.25 (10), p.1432

2015

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Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation

Genome research, 2009-12, Vol.19 (12), p.2163

2009

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Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia

Nature communications, 2018-08, Vol.9 (1), p.3121-15, Article 3121

2018

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Transversions have larger regulatory effects than transitions

BMC genomics, 2017-05, Vol.18 (1), p.394-394, Article 394

2017

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Genome-wide quantification of the effects of DNA methylation on human gene regulation

eLife, 2018-12, Vol.7

2018

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The Hypersensitive Glucocorticoid Response Specifically Regulates Period 1 and Expression of Circadian Genes

Molecular and Cellular Biology, 2012-09, Vol.32 (18), p.3756-3767

2012

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Genome-wide specificity of DNA binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators

Genome research, 2015-08, Vol.25 (8), p.1158

2015

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Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner

Genome research, 2012-11, Vol.22 (11), p.2153

2012

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Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding

Genome research, 2018-09, Vol.28 (9), p.1272

2018

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Causal network inference from gene transcriptional time-series response to glucocorticoids

PLoS computational biology, 2021-01, Vol.17 (1), p.e1008223

2021

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Correction of Dystrophin Expression in Cells From Duchenne Muscular Dystrophy Patients Through Genomic Excision of Exon 51 by Zinc Finger Nucleases

Molecular therapy, 2015-03, Vol.23 (3), p.523-532

2015

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Master Regulators and Cofactors of Human Neuronal Cell Fate Specification Identified by CRISPR Gene Activation Screens

Cell reports (Cambridge), 2020-12, Vol.33 (9), p.108460-108460, Article 108460

2020

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Effects of sequence variation on differential allelic transcription factor occupancy and gene expression

Genome research, 2012-05, Vol.22 (5), p.860

2012

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Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver

Genome Research, 2009-06, Vol.19 (6), p.1044-1056

2009

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Evidence for multiple roles for grainyheadlike 2 in the establishment and maintenance of human mucociliary airway epithelium

Proceedings of the National Academy of Sciences - PNAS, 2013-06, Vol.110 (23), p.9356-9361

2013

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Human genome-wide measurement of drug-responsive regulatory activity

Nature communications, 2018-12, Vol.9 (1), p.5317-9, Article 5317

2018

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From Prescription to Transcription: Genome Sequence as Drug Target

Cell, 2015-07, Vol.162 (1), p.16-17

2015

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Pre-established Chromatin Interactions Mediate the Genomic Response to Glucocorticoids

Cell systems, 2018-08, Vol.7 (2), p.146-160.e7

2018

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Functional Genomics of Healthy and Pathological Fetal Membranes

Frontiers in physiology, 2020-06, Vol.11, p.687-687

2020

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Distinct Properties of Cell-Type-Specific and Shared Transcription Factor Binding Sites

Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements

Clustering gene expression time series data using an infinite Gaussian process mixture model

Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation

Dynamic DNA methylation across diverse human cell lines and tissues

Targeted Epigenetic Remodeling of Endogenous Loci by CRISPR/Cas9-Based Transcriptional Activators Directly Converts Fibroblasts to Neuronal Cells

Genomic approaches for understanding the genetics of complex disease

Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation

Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia

Transversions have larger regulatory effects than transitions

Genome-wide quantification of the effects of DNA methylation on human gene regulation

The Hypersensitive Glucocorticoid Response Specifically Regulates Period 1 and Expression of Circadian Genes

Genome-wide specificity of DNA binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators

Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner

Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding

Causal network inference from gene transcriptional time-series response to glucocorticoids

Correction of Dystrophin Expression in Cells From Duchenne Muscular Dystrophy Patients Through Genomic Excision of Exon 51 by Zinc Finger Nucleases

Master Regulators and Cofactors of Human Neuronal Cell Fate Specification Identified by CRISPR Gene Activation Screens

Effects of sequence variation on differential allelic transcription factor occupancy and gene expression

Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver

Evidence for multiple roles for grainyheadlike 2 in the establishment and maintenance of human mucociliary airway epithelium

Human genome-wide measurement of drug-responsive regulatory activity

From Prescription to Transcription: Genome Sequence as Drug Target

Pre-established Chromatin Interactions Mediate the Genomic Response to Glucocorticoids

Functional Genomics of Healthy and Pathological Fetal Membranes

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