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Tumor exome analysis reveals neoantigen-specific T-cell reactivity in an ipilimumab-responsive melanoma

Journal of clinical oncology, 2013-11, Vol.31 (32), p.e439-e442

2013

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Quantifying the Impact of Human Leukocyte Antigen on the Human Gut Microbiota

mSphere, 2021-08, Vol.6 (4), p.e0047621-e0047621

2021

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A Coevolutionary Arms Race between Hosts and Viruses Drives Polymorphism and Polygenicity of NK Cell Receptors

Molecular biology and evolution, 2015-08, Vol.32 (8), p.2149-2160

2015

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Modeling the adaptive immune system: predictions and simulations

Bioinformatics, 2007-12, Vol.23 (24), p.3265-3275

2007

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Amino acid similarity accounts for T cell cross-reactivity and for "holes" in the T cell repertoire

PloS one, 2008-03, Vol.3 (3), p.e1831-e1831

2008

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Evolutionary and immunological implications of contemporary HIV-1 variation

British medical bulletin, 2001-09, Vol.58 (1), p.19-42

2001

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Long-term adaptation of the influenza A virus by escaping cytotoxic T-cell recognition

Scientific reports, 2016-09, Vol.6 (1), p.33334-33334, Article 33334

2016

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Clustering Patterns of Cytotoxic T-Lymphocyte Epitopes in Human Immunodeficiency Virus Type 1 (HIV-1) Proteins Reveal Imprints of Immune Evasion on HIV-1 Global Variation

Journal of Virology, 2002-09, Vol.76 (17), p.8757-8768

2002

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Complex T-cell receptor repertoire dynamics underlie the CD8+ T-cell response to HIV-1

Journal of virology, 2015-01, Vol.89 (1), p.110-119

2015

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Estimating the fitness cost of escape from HLA presentation in HIV-1 protease and reverse transcriptase

PLoS computational biology, 2012-05, Vol.8 (5), p.e1002525-e1002525

2012

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The specificity and polymorphism of the MHC class I prevents the global adaptation of HIV-1 to the monomorphic proteasome and TAP

PloS one, 2008-10, Vol.3 (10), p.e3525-e3525

2008

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VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium

Nucleic acids research, 2020-01, Vol.48 (D1), p.D1057

2020

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MHC class I molecules exploit the low G+C content of pathogen genomes for enhanced presentation

European journal of immunology, 2010-10, Vol.40 (10), p.2699-2709

2010

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The distribution of CTL epitopes in HIV-1 appears to be random, and similar to that of other proteomes

BMC evolutionary biology, 2009-08, Vol.9, p.184

2009

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Proteome sampling by the HLA class I antigen processing pathway

PLoS computational biology, 2012-05, Vol.8 (5), p.e1002517-e1002517

2012

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Is T Cell Negative Selection a Learning Algorithm?

Cells (Basel, Switzerland), 2020-03, Vol.9 (3), p.690

2020

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Prediction of proteasome cleavage motifs by neural networks

Protein engineering, 2002-04, Vol.15 (4), p.287-296

2002

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Editorial: Role of human leukocyte antigens and killer cell immunoglobulin-like receptors in viral infections

Frontiers in immunology, 2016-07, Vol.7

2016

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CD8+ T-cell receptor bias and immundominance in HIV-1 infection

The Journal of immunology (1950), 2015-04, Vol.194 (11), p.5329-5345

2015

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Abstract B022: Properties of T-cell-recognized neoantigens

Cancer immunology research, 2019-02, Vol.7 (2_Supplement), p.B022-B022

2019

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Use of tumor exome analysis to reveal neo-antigen-specific T-cell reactivity in ipilimumab-responsive melanoma

Journal of clinical oncology, 2013-05, Vol.31 (15_suppl), p.9085-9085

2013

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Correction: The Specificity and Polymorphism of the MHC Class I Prevents the Global Adaptation of HIV-1 to the Monomorphic Proteasome and TAP

PloS one, 2009-01, Vol.4 (1)

2009

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From image processing to classification: IV. Classification of electrophoretic patterns by neural networks and statistical methods enable quality assessment of wheat varieties for breadmaking

Electrophoresis, 1996, Vol.17 (4), p.694-698

1996

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Course of pandemic influenza A(H1N1) 2009 virus infection in Dutch patients

Influenza and other respiratory viruses, 2012-05, Vol.6 (3), p.e16-e20

2012

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Amino Acid Sequence
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Hiv-1 - Genetics
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T-Lymphocytes, Cytotoxic - Immunology
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Tumor exome analysis reveals neoantigen-specific T-cell reactivity in an ipilimumab-responsive melanoma

Quantifying the Impact of Human Leukocyte Antigen on the Human Gut Microbiota

A Coevolutionary Arms Race between Hosts and Viruses Drives Polymorphism and Polygenicity of NK Cell Receptors

Modeling the adaptive immune system: predictions and simulations

Amino acid similarity accounts for T cell cross-reactivity and for "holes" in the T cell repertoire

Evolutionary and immunological implications of contemporary HIV-1 variation

Long-term adaptation of the influenza A virus by escaping cytotoxic T-cell recognition

Clustering Patterns of Cytotoxic T-Lymphocyte Epitopes in Human Immunodeficiency Virus Type 1 (HIV-1) Proteins Reveal Imprints of Immune Evasion on HIV-1 Global Variation

Complex T-cell receptor repertoire dynamics underlie the CD8+ T-cell response to HIV-1

Estimating the fitness cost of escape from HLA presentation in HIV-1 protease and reverse transcriptase

The specificity and polymorphism of the MHC class I prevents the global adaptation of HIV-1 to the monomorphic proteasome and TAP

VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium

MHC class I molecules exploit the low G+C content of pathogen genomes for enhanced presentation

The distribution of CTL epitopes in HIV-1 appears to be random, and similar to that of other proteomes

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity

Proteome sampling by the HLA class I antigen processing pathway

Is T Cell Negative Selection a Learning Algorithm?

Prediction of proteasome cleavage motifs by neural networks

Editorial: Role of human leukocyte antigens and killer cell immunoglobulin-like receptors in viral infections

CD8+ T-cell receptor bias and immundominance in HIV-1 infection

Abstract B022: Properties of T-cell-recognized neoantigens

Use of tumor exome analysis to reveal neo-antigen-specific T-cell reactivity in ipilimumab-responsive melanoma

Correction: The Specificity and Polymorphism of the MHC Class I Prevents the Global Adaptation of HIV-1 to the Monomorphic Proteasome and TAP

From image processing to classification: IV. Classification of electrophoretic patterns by neural networks and statistical methods enable quality assessment of wheat varieties for breadmaking

Course of pandemic influenza A(H1N1) 2009 virus infection in Dutch patients

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