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Detection of multiscale pockets on protein surfaces using mathematical morphology

Proteins, structure, function, and bioinformatics, 2010-04, Vol.78 (5), p.1195-1211

Kawabata, Takeshi

2010

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Current knowledge on enzymatic PET degradation and its possible application to waste stream management and other fields

Applied microbiology and biotechnology, 2019-06, Vol.103 (11), p.4253-4268

2019

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HOMCOS: an updated server to search and model complex 3D structures

Journal of structural and functional genomics, 2016-12, Vol.17 (4), p.83-99

Kawabata, Takeshi

2016

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Structural Perspective of NR4A Nuclear Receptor Family and Their Potential Endogenous Ligands

Biological and Pharmaceutical Bulletin, 2024/03/01, Vol.47(3), pp.580-590

2024

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Detection of cave pockets in large molecules: Spaces into which internal probes can enter, but external probes from outside cannot

Biophysics and Physicobiology, 2019, Vol.16, pp.391-406

Kawabata, Takeshi

2019

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The Biological Structure Model Archive (BSM-Arc): an archive for in silico models and simulations

Biophysical reviews, 2020-04, Vol.12 (2), p.371-375

2020

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Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures

Nucleic acids research, 2017-01, Vol.45 (D1), p.D282-D288

2017

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Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data

Protein science, 2022-01, Vol.31 (1), p.173-186

2022

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Difference of binding modes among three ligands to a receptor mSin3B corresponding to their inhibitory activities

Scientific reports, 2021-03, Vol.11 (1), p.6178-6178, Article 6178

2021

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Multimodal Structural Distribution of the p53 C‑Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to Extradisorder

Journal of chemical theory and computation, 2019-04, Vol.15 (4), p.2597-2607

2019

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New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)

Protein science, 2018-01, Vol.27 (1), p.95-102

2018

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A study to determine the number of expectation-maximization iterations for Gaussian-mixture-model-based speaker recognition

THE JOURNAL OF THE ACOUSTICAL SOCIETY OF JAPAN, 2022/11/01, Vol.78(11), pp.650-653

2022

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Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites

Proteins, structure, function, and bioinformatics, 2007-08, Vol.68 (2), p.516-529

2007

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Novel Acid Amplifier Generating Disulfonimide as Superacid

Journal of Photopolymer Science and Technology, 2017/12/20, Vol.30(6), pp.645-649

2017

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Identification of ultra-rare disruptive variants in voltage-gated calcium channel-encoding genes in Japanese samples of schizophrenia and autism spectrum disorder

Translational psychiatry, 2022-02, Vol.12 (1), p.84-84, Article 84

2022

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Synthesis, Structural Analysis, and Reaction of 3-Aza-5-[7]orthocyclophyne

Chemistry letters, 2013-11, Vol.42 (11), p.1374-1376

2013

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Functional characterization of rare NRXN1 variants identified in autism spectrum disorders and schizophrenia

Journal of neurodevelopmental disorders, 2020-09, Vol.12 (1), p.25-25, Article 25

2020

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Gene expression and pathway analysis of CTNNB1 in cancer and stem cells

World journal of stem cells, 2016-11, Vol.8 (11), p.384-395

2016

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Rigid-Body Fitting of Atomic Models on 3D Density Maps of Electron Microscopy

Integrative Structural Biology with Hybrid Methods, p.219-235

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Catalytic mechanism of short ethoxy chain nonylphenol dehydrogenase belonging to a polyethylene glycol dehydrogenase group in the GMC oxidoreductase family

International journal of molecular sciences, 2013-01, Vol.14 (1), p.1218-1231

2013

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Synthesis and Structural Analysis of Nine-Membered Enyne Nitrogen Heterocycles

Heterocycles, 2015, Vol.90 (2), p.901

2015

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Engineered polyethylene terephthalate hydrolases: perspectives and limits

Applied microbiology and biotechnology, 2024-12, Vol.108 (1), p.404, Article 404

2024

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Protein structure comparison using the Markov transition model of evolution

Proteins, structure, function, and bioinformatics, 2000-10, Vol.41 (1), p.108-122

2000

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HOMCOS: an updated server to search and model complex 3D structures

Journal of structural and functional genomics, 2016-12, Vol.17 (4), p.83-99

Kawabata, Takeshi

2016

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MATRAS: A program for protein 3D structure comparison

Nucleic acids research, 2003-07, Vol.31 (13), p.3367-3369

Kawabata, Takeshi

2003

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Detection of multiscale pockets on protein surfaces using mathematical morphology

Current knowledge on enzymatic PET degradation and its possible application to waste stream management and other fields

HOMCOS: an updated server to search and model complex 3D structures

Structural Perspective of NR4A Nuclear Receptor Family and Their Potential Endogenous Ligands

Detection of cave pockets in large molecules: Spaces into which internal probes can enter, but external probes from outside cannot

The Biological Structure Model Archive (BSM-Arc): an archive for in silico models and simulations

Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures

Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data

Difference of binding modes among three ligands to a receptor mSin3B corresponding to their inhibitory activities

Multimodal Structural Distribution of the p53 C‑Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to Extradisorder

New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)

A study to determine the number of expectation-maximization iterations for Gaussian-mixture-model-based speaker recognition

Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites

Novel Acid Amplifier Generating Disulfonimide as Superacid

Identification of ultra-rare disruptive variants in voltage-gated calcium channel-encoding genes in Japanese samples of schizophrenia and autism spectrum disorder

Synthesis, Structural Analysis, and Reaction of 3-Aza-5-[7]orthocyclophyne

Functional characterization of rare NRXN1 variants identified in autism spectrum disorders and schizophrenia

Gene expression and pathway analysis of CTNNB1 in cancer and stem cells

Rigid-Body Fitting of Atomic Models on 3D Density Maps of Electron Microscopy

Catalytic mechanism of short ethoxy chain nonylphenol dehydrogenase belonging to a polyethylene glycol dehydrogenase group in the GMC oxidoreductase family

Synthesis and Structural Analysis of Nine-Membered Enyne Nitrogen Heterocycles

Engineered polyethylene terephthalate hydrolases: perspectives and limits

Protein structure comparison using the Markov transition model of evolution

HOMCOS: an updated server to search and model complex 3D structures

MATRAS: A program for protein 3D structure comparison

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