Details

Autor(en) / Beteiligte

• Rosenbloom, Kate R
• Dreszer, Timothy R
• Long, Jeffrey C
• Malladi, Venkat S
• Sloan, Cricket A
• Raney, Brian J
• Cline, Melissa S
• Karolchik, Donna
• Barber, Galt P
• Clawson, Hiram
• Diekhans, Mark
• Fujita, Pauline A
• Goldman, Mary
• Gravell, Robert C
• Harte, Rachel A
• Hinrichs, Angie S
• Kirkup, Vanessa M
• Kuhn, Robert M
• Learned, Katrina
• Maddren, Morgan
• Meyer, Laurence R
• Pohl, Andy
• Rhead, Brooke
• Wong, Matthew C
• Zweig, Ann S
• Haussler, David
• Kent, W James

Titel

ENCODE whole-genome data in the UCSC Genome Browser: update 2012

Ist Teil von

• Nucleic acids research, 2012-01, Vol.40 (Database issue), p.D912

Ort / Verlag

England

Erscheinungsjahr

2012

Quelle

MEDLINE

Beschreibungen/Notizen

• The Encyclopedia of DNA Elements (ENCODE) Consortium is entering its 5th year of production-level effort generating high-quality whole-genome functional annotations of the human genome. The past year has brought the ENCODE compendium of functional elements to critical mass, with a diverse set of 27 biochemical assays now covering 200 distinct human cell types. Within the mouse genome, which has been under study by ENCODE groups for the past 2 years, 37 cell types have been assayed. Over 2000 individual experiments have been completed and submitted to the Data Coordination Center for public use. UCSC makes this data available on the quality-reviewed public Genome Browser (http://genome.ucsc.edu) and on an early-access Preview Browser (http://genome-preview.ucsc.edu). Visual browsing, data mining and download of raw and processed data files are all supported. An ENCODE portal (http://encodeproject.org) provides specialized tools and information about the ENCODE data sets.