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We constructed a library of >10
12 unique, covalently coupled mRNA-protein molecules by randomizing three exposed loops of an immunoglobulin-like protein, the tenth fibronectin type III domain (
10Fn3). The antibody mimics that bound TNF-α were isolated from the library using mRNA display. Ten rounds of selection produced
10Fn3 variants that bound TNF-α with dissociation constants (K
d) between 1 and 24 nM. After affinity maturation, the lowest K
d measured was 20 pM. Selected antibody mimics were shown to capture TNF-α when immobilized in a protein microarray.
10Fn3-based scaffold libraries and mRNA-display allow the isolation of high-affinity, specific antigen binding proteins; potential applications of such binding proteins include diagnostic protein microarrays and protein therapeutics.