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Amylocorticiales ord. nov. and Jaapiales ord. nov.: Early diverging clades of Agaricomycetidae dominated by corticioid forms

Mycologia, 2010-07, Vol.102 (4), p.865-880

2010

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New orders of Agaricomycetidae Amylocorticiales ord. nov. and Jaapiales ord. nov.: Early diverging clades of Agaricomycetidae were dominated by corticioid forms

Mycologia, 2010, Vol.102 (4), p.865

2010

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Molecular evolution and phylogeny of the angiosperm ycf2 gene

Journal of systematics and evolution : JSE, 2010-07, Vol.48 (4), p.240-248

2010

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A new genomic blueprint of the human gut microbiota

Nature (London), 2019-04, Vol.568 (7753), p.499-504

2019

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Integrated omics analysis of specialized metabolism in medicinal plants

The Plant journal : for cell and molecular biology, 2017-05, Vol.90 (4), p.764-787

2017

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A metagenomic strategy for harnessing the chemical repertoire of the human microbiome

Science (American Association for the Advancement of Science), 2019-12, Vol.366 (6471)

2019

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Correlative metabologenomics of 110 fungi reveals metabolite-gene cluster pairs

Nature chemical biology, 2023-07, Vol.19 (7), p.846

2023

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Metabolomics and genomics in natural products research: complementary tools for targeting new chemical entities

Natural product reports, 2021-11, Vol.38 (11), p.241-265

2021

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Identification of microRNA clusters cooperatively acting on epithelial to mesenchymal transition in triple negative breast cancer

Nucleic acids research, 2019-03, Vol.47 (5), p.2205

2019

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Whole-genome microsynteny-based phylogeny of angiosperms

Nature communications, 2021-06, Vol.12 (1), p.3498-3498, Article 3498

2021

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piRBase: integrating piRNA annotation in all aspects

Nucleic acids research, 2022-01, Vol.50 (D1), p.D265

2022

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Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

Proceedings of the National Academy of Sciences - PNAS, 2013-01, Vol.110 (3), p.1053-1058

2013

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Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery

Nature communications, 2021-05, Vol.12 (1), p.3225-17, Article 3225

2021

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GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains

BioMed research international, 2015-01, Vol.2015, p.918710-7

2015

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Clust: automatic extraction of optimal co-expressed gene clusters from gene expression data

Genome Biology, 2018-10, Vol.19 (1), p.172-172, Article 172

2018

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Plasmid flux in Escherichia coli ST131 sublineages, analyzed by plasmid constellation network (PLACNET), a new method for plasmid reconstruction from whole genome sequences

PLoS genetics, 2014-12, Vol.10 (12), p.e1004766-e1004766

2014

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Gene family innovation, conservation and loss on the animal stem lineage

eLife, 2018-05, Vol.7

2018

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A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation

Nature genetics, 2016-03, Vol.48 (3), p.336-341

2016

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Drug and disease signature integration identifies synergistic combinations in glioblastoma

Nature communications, 2018-12, Vol.9 (1), p.5315-13, Article 5315

2018

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BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

Genome research, 2019-08, Vol.29 (8), p.1352

2019

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Automated classification of tailed bacteriophages according to their neck organization

BMC genomics, 2014-11, Vol.15 (1), p.1027-1027, Article 1027

2014

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Prospects for Inferring Very Large Phylogenies by Using the Neighbor-Joining Method

Proceedings of the National Academy of Sciences - PNAS, 2004-07, Vol.101 (30), p.11030-11035

2004

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Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies

Systematic biology, 2008-08, Vol.57 (4), p.613-627

2008

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Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)

Proceedings of the National Academy of Sciences - PNAS, 2010-06, Vol.107 (26), p.11889-11894

2010

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Amylocorticiales ord. nov. and Jaapiales ord. nov.: Early diverging clades of Agaricomycetidae dominated by corticioid forms

New orders of Agaricomycetidae Amylocorticiales ord. nov. and Jaapiales ord. nov.: Early diverging clades of Agaricomycetidae were dominated by corticioid forms

Molecular evolution and phylogeny of the angiosperm ycf2 gene

A new genomic blueprint of the human gut microbiota

Integrated omics analysis of specialized metabolism in medicinal plants

A metagenomic strategy for harnessing the chemical repertoire of the human microbiome

Correlative metabologenomics of 110 fungi reveals metabolite-gene cluster pairs

Metabolomics and genomics in natural products research: complementary tools for targeting new chemical entities

Identification of microRNA clusters cooperatively acting on epithelial to mesenchymal transition in triple negative breast cancer

Whole-genome microsynteny-based phylogeny of angiosperms

piRBase: integrating piRNA annotation in all aspects

Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation

Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery

GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains

Clust: automatic extraction of optimal co-expressed gene clusters from gene expression data

Plasmid flux in Escherichia coli ST131 sublineages, analyzed by plasmid constellation network (PLACNET), a new method for plasmid reconstruction from whole genome sequences

Gene family innovation, conservation and loss on the animal stem lineage

A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation

Drug and disease signature integration identifies synergistic combinations in glioblastoma

BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

Automated classification of tailed bacteriophages according to their neck organization

Prospects for Inferring Very Large Phylogenies by Using the Neighbor-Joining Method

Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)

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