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The BioCyc collection of microbial genomes and metabolic pathways

Briefings in bioinformatics, 2019-07, Vol.20 (4), p.1085-1093

2019

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Next-Gen Approaches to Flavor-Related Metabolism

Annual review of plant biology, 2019-04, Vol.70, p.187

2019

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Dynamic balancing of intestinal short-chain fatty acids: The crucial role of bacterial metabolism

Trends in Food Science & Technology, 2020-06, Vol.100, p.118-130

2020

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gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models

Genome Biology, 2021-03, Vol.22 (1), p.81-81, Article 81

2021

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Exposure to environmental contaminants is associated with altered hepatic lipid metabolism in non-alcoholic fatty liver disease

Journal of hepatology, 2022-02, Vol.76 (2), p.283-293

2022

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The NLRP3 inflammasome: Role in metabolic disorders and regulation by metabolic pathways

Cancer letters, 2018-04, Vol.419, p.8-19

2018

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Multi-label classification with XGBoost for metabolic pathway prediction

BMC bioinformatics, 2024-02, Vol.25 (1), p.52-52, Article 52

2024

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Diabetes and Hypertension: Is There a Common Metabolic Pathway?

Current atherosclerosis reports, 2012-04, Vol.14 (2), p.160-166

2012

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Recent advances and perspectives of metabolomics-based investigations in Parkinson's disease

Molecular neurodegeneration, 2019-01, Vol.14 (1), p.3-3, Article 3

2019

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The Road Not Taken: The Rumen Microbiome, Functional Groups, and Community States

Trends in microbiology (Regular ed.), 2019-06, Vol.27 (6), p.538-549

2019

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Assessing the Causal Effects of Human Serum Metabolites on 5 Major Psychiatric Disorders

Schizophrenia bulletin, 2020-07, Vol.46 (4), p.804-813

2020

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Bacteria-mediated phthalic acid esters degradation and related molecular mechanisms

Applied microbiology and biotechnology, 2018-02, Vol.102 (3), p.1085-1096

2018

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Metabolic pathway-based molecular subtyping of colon cancer reveals clinical immunotherapy potential and prognosis

Journal of cancer research and clinical oncology, 2023-06, Vol.149 (6), p.2393-2416

2023

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5-Aminolevulinic acid (ALA) biosynthetic and metabolic pathways and its role in higher plants: a review

Plant growth regulation, 2019-03, Vol.87 (2), p.357-374

2019

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Multifaceted role of branched-chain amino acid metabolism in cancer

Oncogene, 2020-10, Vol.39 (44), p.6747-6756

2020

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A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants

The Plant cell, 2017-05, Vol.29 (5), p.944-959

2017

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Latilactobacillus sakei: a candidate probiotic with a key role in food fermentations and health promotion

Critical reviews in food science and nutrition, 2024, Vol.64 (4), p.978-995

2024

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Relaxation of tyrosine pathway regulation underlies the evolution of betalain pigmentation in Caryophyllales

The New phytologist, 2018-01, Vol.217 (2), p.896-908

2018

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Tryptophan-kynurenine metabolism: a link between the gut and brain for depression in inflammatory bowel disease

Journal of neuroinflammation, 2021-06, Vol.18 (1), p.135-135, Article 135

2021

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Fecal metagenomic profiles in subgroups of patients with myalgic encephalomyelitis/chronic fatigue syndrome

Microbiome, 2017-04, Vol.5 (1), p.44-44, Article 44

2017

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The role and mechanism of tryptophan - kynurenine metabolic pathway in depression

Reviews in the neurosciences, 2023-04, Vol.34 (3), p.313

2023

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A systematic review on the flavor of soy‐based fermented foods: Core fermentation microbiome, multisensory flavor substances, key enzymes, and metabolic pathways

Comprehensive reviews in food science and food safety, 2023-07, Vol.22 (4), p.2773-2801

2023

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Metabolomics Provides Novel Insights into Epilepsy Diagnosis and Treatment: A Review

Neurochemical research, 2022-04, Vol.47 (4), p.844-859

2022

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The chemistry of gut microbial metabolism of polyphenols

Phytochemistry reviews, 2016-06, Vol.15 (3), p.425-444

2016

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Carbon and nitrogen metabolic pathways and interaction of cold-resistant heterotrophic nitrifying bacteria under aerobic and anaerobic conditions

Chemosphere (Oxford), 2019-11, Vol.234, p.162-170

2019

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The BioCyc collection of microbial genomes and metabolic pathways

Next-Gen Approaches to Flavor-Related Metabolism

Dynamic balancing of intestinal short-chain fatty acids: The crucial role of bacterial metabolism

gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models

Exposure to environmental contaminants is associated with altered hepatic lipid metabolism in non-alcoholic fatty liver disease

The NLRP3 inflammasome: Role in metabolic disorders and regulation by metabolic pathways

Multi-label classification with XGBoost for metabolic pathway prediction

Diabetes and Hypertension: Is There a Common Metabolic Pathway?

Recent advances and perspectives of metabolomics-based investigations in Parkinson's disease

The Road Not Taken: The Rumen Microbiome, Functional Groups, and Community States

Assessing the Causal Effects of Human Serum Metabolites on 5 Major Psychiatric Disorders

Bacteria-mediated phthalic acid esters degradation and related molecular mechanisms

Metabolic pathway-based molecular subtyping of colon cancer reveals clinical immunotherapy potential and prognosis

5-Aminolevulinic acid (ALA) biosynthetic and metabolic pathways and its role in higher plants: a review

Multifaceted role of branched-chain amino acid metabolism in cancer

A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants

Latilactobacillus sakei: a candidate probiotic with a key role in food fermentations and health promotion

Relaxation of tyrosine pathway regulation underlies the evolution of betalain pigmentation in Caryophyllales

Tryptophan-kynurenine metabolism: a link between the gut and brain for depression in inflammatory bowel disease

Fecal metagenomic profiles in subgroups of patients with myalgic encephalomyelitis/chronic fatigue syndrome

The role and mechanism of tryptophan - kynurenine metabolic pathway in depression

A systematic review on the flavor of soy‐based fermented foods: Core fermentation microbiome, multisensory flavor substances, key enzymes, and metabolic pathways

Metabolomics Provides Novel Insights into Epilepsy Diagnosis and Treatment: A Review

The chemistry of gut microbial metabolism of polyphenols

Carbon and nitrogen metabolic pathways and interaction of cold-resistant heterotrophic nitrifying bacteria under aerobic and anaerobic conditions

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