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Integrative pathway enrichment analysis of multivariate omics data

Nature communications, 2020-02, Vol.11 (1), p.735-16, Article 735

2020

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Pathway and network analysis of more than 2500 whole cancer genomes

Nature communications, 2020-02, Vol.11 (1), p.729-729, Article 729

2020

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Genomic Landscapes of Human Breast and Colorectal Cancers

Science (American Association for the Advancement of Science), 2007-11, Vol.318 (5853), p.1108-1113

2007

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Edgotype: a fundamental link between genotype and phenotype

Current opinion in genetics & development, 2013-12, Vol.23 (6), p.649-657

2013

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Methanogenesis and the Wood-Ljungdahl Pathway: An Ancient, Versatile, and Fragile Association

Genome biology and evolution, 2016-06, Vol.8 (6), p.1706-1711

2016

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KEGG: integrating viruses and cellular organisms

Nucleic acids research, 2021-01, Vol.49 (D1), p.D545

2021

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Metabolism disrupting chemicals and metabolic disorders

Reproductive toxicology (Elmsford, N.Y.), 2017-03, Vol.68, p.3-33

2017

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The impact of cellular metabolism on chromatin dynamics and epigenetics

Nature cell biology, 2017-11, Vol.19 (11), p.1298

2017

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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D459

2014

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MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis

Nucleic acids research, 2018-07, Vol.46 (W1), p.W486

2018

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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

Nucleic acids research, 2016-01, Vol.44 (D1), p.D471

2016

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The Reactome Pathway Knowledgebase 2024

Nucleic acids research, 2024-01, Vol.52 (D1), p.D672

2024

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Constraint-based models predict metabolic and associated cellular functions

Nature reviews. Genetics, 2014-02, Vol.15 (2), p.107

2014

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Network Integration of Parallel Metabolic and Transcriptional Data Reveals Metabolic Modules that Regulate Macrophage Polarization

Immunity (Cambridge, Mass.), 2015-03, Vol.42 (3), p.419-430

2015

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A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites

Nature (London), 2017-11, Vol.551 (7682), p.648-652

2017

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Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease

Nature genetics, 2017-10, Vol.49 (10), p.1450-1457

2017

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Metabolomics activity screening for identifying metabolites that modulate phenotype

Nature biotechnology, 2018-04, Vol.36 (4), p.316-320

2018

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CCR7 Chemokine Receptor-Inducible lnc-Dpf3 Restrains Dendritic Cell Migration by Inhibiting HIF-1α-Mediated Glycolysis

Immunity (Cambridge, Mass.), 2019-03, Vol.50 (3), p.600-615.e15

2019

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The Structure and Function of Major Plant Metabolite Modifications

Molecular plant, 2019-07, Vol.12 (7), p.899-919

2019

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Exploring the Diversity of Plant Metabolism

Trends in plant science, 2019-01, Vol.24 (1), p.83-98

2019

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Extracellular electron transfer mechanisms between microorganisms and minerals

Nature reviews. Microbiology, 2016-10, Vol.14 (10), p.651-662

2016

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Fast automated reconstruction of genome-scale metabolic models for microbial species and communities

Nucleic acids research, 2018-09, Vol.46 (15), p.7542

2018

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BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

Nucleic acids research, 2016-01, Vol.44 (D1), p.D515

2016

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Monocarboxylate transporters in cancer

Molecular metabolism (Germany), 2020-03, Vol.33, p.48-66

2020

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VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases

Nucleic acids research, 2015-01, Vol.43 (Database issue), p.D707

2015

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Integrative pathway enrichment analysis of multivariate omics data

Pathway and network analysis of more than 2500 whole cancer genomes

Genomic Landscapes of Human Breast and Colorectal Cancers

Edgotype: a fundamental link between genotype and phenotype

Methanogenesis and the Wood-Ljungdahl Pathway: An Ancient, Versatile, and Fragile Association

KEGG: integrating viruses and cellular organisms

Metabolism disrupting chemicals and metabolic disorders

The impact of cellular metabolism on chromatin dynamics and epigenetics

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

The Reactome Pathway Knowledgebase 2024

Constraint-based models predict metabolic and associated cellular functions

Network Integration of Parallel Metabolic and Transcriptional Data Reveals Metabolic Modules that Regulate Macrophage Polarization

A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites

Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease

Metabolomics activity screening for identifying metabolites that modulate phenotype

CCR7 Chemokine Receptor-Inducible lnc-Dpf3 Restrains Dendritic Cell Migration by Inhibiting HIF-1α-Mediated Glycolysis

The Structure and Function of Major Plant Metabolite Modifications

Exploring the Diversity of Plant Metabolism

Extracellular electron transfer mechanisms between microorganisms and minerals

Fast automated reconstruction of genome-scale metabolic models for microbial species and communities

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

Monocarboxylate transporters in cancer

VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases

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