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DNA-Binding Specificities of Human Transcription Factors

Cell, 2013-01, Vol.152 (1-2), p.327-339

2013

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High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts

Genome Biology, 2021-01, Vol.22 (1), p.34-34, Article 34

2021

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RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions

Nature communications, 2020-02, Vol.11 (1), p.1018-1018, Article 1018

2020

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Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

Genome research, 2010-06, Vol.20 (6), p.861

2010

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Structure and evolution of transcriptional regulatory networks

Current opinion in structural biology, 2004-06, Vol.14 (3), p.283-291

2004

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Genomic analysis of regulatory network dynamics reveals large topological changes

Nature, 2004-09, Vol.431 (7006), p.308-312

2004

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Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level

Nucleic acids research, 2001-07, Vol.29 (13), p.2860

2001

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Author Correction: High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts

Genome Biology, 2021-01, Vol.22 (1), p.46-46, Article 46

2021

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Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

Genome research, 2004-06, Vol.14 (6), p.1107

2004

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Genomic analysis of gene expression relationships in transcriptional regulatory networks

Trends in genetics, 2003-08, Vol.19 (8), p.422-427

2003

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Protein–DNA Interactions: Amino Acid Conservation and the Effects of Mutations on Binding Specificity

Journal of molecular biology, 2002-07, Vol.320 (5), p.991-1009

2002

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Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model

Journal of molecular biology, 2001-11, Vol.313 (4), p.673-681

2001

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Distribution of NF-κB-Binding Sites across Human Chromosome 22

Proceedings of the National Academy of Sciences - PNAS, 2003-10, Vol.100 (21), p.12247-12252

2003

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The transcriptional activity of human Chromosome 22

Genes & development, 2003-02, Vol.17 (4), p.529-540

2003

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Protein-RNA interactions: a structural analysis

Nucleic acids research, 2001-02, Vol.29 (4), p.943

2001

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Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae

Genes & development, 2002-12, Vol.16 (23), p.3017-3033

2002

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Functional interplay between MSL1 and CDK7 controls RNA polymerase II Ser5 phosphorylation

Nature structural & molecular biology, 2016-06, Vol.23 (6), p.580

2016

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CREB Binds to Multiple Loci on Human Chromosome 22

Molecular and Cellular Biology, 2004-05, Vol.24 (9), p.3804-3814

2004

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Interrelating different types of genomic data, from proteome to secretome: 'oming in on function

Genome research, 2001-09, Vol.11 (9), p.1463

2001

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Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22

Genome research, 2002-02, Vol.12 (2), p.272

2002

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Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data

Bioinformatics, 2003-10, Vol.19 (15), p.1917-1926

2003

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NUCPLOT: a program to generate schematic diagrams of protein-nucleic acid interactions

Nucleic acids research, 1997-12, Vol.25 (24), p.4940

1997

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Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes

Nucleic acids research, 2002-06, Vol.30 (11), p.2515

2002

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Protein clefts in molecular recognition and function

Protein science, 1996-12, Vol.5 (12), p.2438-2452

1996

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DNA-Binding Specificities of Human Transcription Factors

High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts

RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions

Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

Structure and evolution of transcriptional regulatory networks

Genomic analysis of regulatory network dynamics reveals large topological changes

Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level

Author Correction: High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

Genomic analysis of gene expression relationships in transcriptional regulatory networks

Protein–DNA Interactions: Amino Acid Conservation and the Effects of Mutations on Binding Specificity

Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model

Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions

Distribution of NF-κB-Binding Sites across Human Chromosome 22

The transcriptional activity of human Chromosome 22

Protein-RNA interactions: a structural analysis

Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae

Functional interplay between MSL1 and CDK7 controls RNA polymerase II Ser5 phosphorylation

CREB Binds to Multiple Loci on Human Chromosome 22

Interrelating different types of genomic data, from proteome to secretome: 'oming in on function

Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22

Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data

NUCPLOT: a program to generate schematic diagrams of protein-nucleic acid interactions

Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes

Protein clefts in molecular recognition and function

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