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Deconstructing the polymerase chain reaction: understanding and correcting bias associated with primer degeneracies and primer-template mismatches

PloS one, 2015-05, Vol.10 (5), p.e0128122-e0128122

2015

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Chronic oral application of a periodontal pathogen results in brain inflammation, neurodegeneration and amyloid beta production in wild type mice

PloS one, 2018-10, Vol.13 (10), p.e0204941-e0204941

2018

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Circadian disorganization alters intestinal microbiota

PloS one, 2014-05, Vol.9 (5), p.e97500

2014

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Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

Environmental microbiology, 2012-02, Vol.14 (2), p.285-290

2012

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Colonic bacterial composition in Parkinson's disease

Movement disorders, 2015-09, Vol.30 (10), p.1351-1360

2015

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Niche and host-associated functional signatures of the root surface microbiome

Nature communications, 2014-09, Vol.5 (1), p.4950-4950, Article 4950

2014

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Role of TLR4 in the gut-brain axis in Parkinson's disease: a translational study from men to mice

Gut, 2019-05, Vol.68 (5), p.829

2019

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Burn Injury Alters the Intestinal Microbiome and Increases Gut Permeability and Bacterial Translocation

PloS one, 2015-07, Vol.10 (7), p.e0129996-e0129996

2015

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Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples

PloS one, 2023-01, Vol.18 (1), p.e0280293-e0280293

2023

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Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill

Applied and Environmental Microbiology, 2011-11, Vol.77 (22), p.7962-7974

2011

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Chronic stress-induced gut dysfunction exacerbates Parkinson's disease phenotype and pathology in a rotenone-induced mouse model of Parkinson's disease

Neurobiology of disease, 2020-02, Vol.135, p.104352, Article 104352

2020

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Gut microbiota varies by opioid use, circulating leptin and oxytocin in African American men with diabetes and high burden of chronic disease

PloS one, 2018-03, Vol.13 (3), p.e0194171

2018

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Dietary inulin alters the gut microbiome, enhances systemic metabolism and reduces neuroinflammation in an APOE4 mouse model

PloS one, 2019-08, Vol.14 (8), p.e0221828-e0221828

2019

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Single-cell transcriptional changes associated with drug tolerance and response to combination therapies in cancer

Nature communications, 2021-03, Vol.12 (1), p.1628-1628, Article 1628

2021

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The Circadian Clock Mutation Promotes Intestinal Dysbiosis

Alcoholism, clinical and experimental research, 2016-02, Vol.40 (2), p.335-347

2016

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Dietary Fiber Treatment Corrects the Composition of Gut Microbiota, Promotes SCFA Production, and Suppresses Colon Carcinogenesis

Genes, 2018-02, Vol.9 (2), p.102

2018

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Taxa-specific changes in soil microbial community composition induced by pyrogenic carbon amendments

Soil biology & biochemistry, 2011-02, Vol.43 (2), p.385-392

2011

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Human milk oligosaccharides protect against the development of autoimmune diabetes in NOD-mice

Scientific reports, 2018-03, Vol.8 (1), p.3829-15, Article 3829

2018

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APOE genetics influence murine gut microbiome

Scientific reports, 2022-02, Vol.12 (1), p.1906-1906, Article 1906

2022

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Reproducible changes in the gut microbiome suggest a shift in microbial and host metabolism during spaceflight

Microbiome, 2019-08, Vol.7 (1), p.113-18, Article 113

2019

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The Negative Effects of Feces-Associated Microorganisms on the Fitness of the Stored Product Mite Tyrophagus putrescentiae

Frontiers in microbiology, 2022-03, Vol.13, p.756286-756286

2022

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Timing of food intake impacts daily rhythms of human salivary microbiota: a randomized, crossover study

The FASEB journal, 2018-04, Vol.32 (4), p.2060-2072

2018

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Microglia, inflammation and gut microbiota responses in a progressive monkey model of Parkinson's disease: A case series

Neurobiology of disease, 2020-10, Vol.144, p.105027-105027, Article 105027

2020

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Synergistic effects of APOE and sex on the gut microbiome of young EFAD transgenic mice

Molecular neurodegeneration, 2019-12, Vol.14 (1), p.47-47, Article 47

2019

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Analysis of bacterial vaginosis, the vaginal microbiome, and sexually transmitted infections following the provision of menstrual cups in Kenyan schools: Results of a nested study within a cluster randomized controlled trial

PLoS medicine, 2023-07, Vol.20 (7), p.e1004258-e1004258

2023

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Deconstructing the polymerase chain reaction: understanding and correcting bias associated with primer degeneracies and primer-template mismatches

Chronic oral application of a periodontal pathogen results in brain inflammation, neurodegeneration and amyloid beta production in wild type mice

Circadian disorganization alters intestinal microbiota

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

Colonic bacterial composition in Parkinson's disease

Niche and host-associated functional signatures of the root surface microbiome

Role of TLR4 in the gut-brain axis in Parkinson's disease: a translational study from men to mice

Burn Injury Alters the Intestinal Microbiome and Increases Gut Permeability and Bacterial Translocation

Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples

Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill

Chronic stress-induced gut dysfunction exacerbates Parkinson's disease phenotype and pathology in a rotenone-induced mouse model of Parkinson's disease

Gut microbiota varies by opioid use, circulating leptin and oxytocin in African American men with diabetes and high burden of chronic disease

Dietary inulin alters the gut microbiome, enhances systemic metabolism and reduces neuroinflammation in an APOE4 mouse model

Single-cell transcriptional changes associated with drug tolerance and response to combination therapies in cancer

The Circadian Clock Mutation Promotes Intestinal Dysbiosis

Dietary Fiber Treatment Corrects the Composition of Gut Microbiota, Promotes SCFA Production, and Suppresses Colon Carcinogenesis

Taxa-specific changes in soil microbial community composition induced by pyrogenic carbon amendments

Human milk oligosaccharides protect against the development of autoimmune diabetes in NOD-mice

APOE genetics influence murine gut microbiome

Reproducible changes in the gut microbiome suggest a shift in microbial and host metabolism during spaceflight

The Negative Effects of Feces-Associated Microorganisms on the Fitness of the Stored Product Mite Tyrophagus putrescentiae

Timing of food intake impacts daily rhythms of human salivary microbiota: a randomized, crossover study

Microglia, inflammation and gut microbiota responses in a progressive monkey model of Parkinson's disease: A case series

Synergistic effects of APOE and sex on the gut microbiome of young EFAD transgenic mice

Analysis of bacterial vaginosis, the vaginal microbiome, and sexually transmitted infections following the provision of menstrual cups in Kenyan schools: Results of a nested study within a cluster randomized controlled trial

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