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Assessing the effect of sequencing depth and sample size in population genetics inferences

PloS one, 2013-11, Vol.8 (11), p.e79667-e79667

2013

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Detecting adaptive introgression in human evolution using convolutional neural networks

eLife, 2021-05, Vol.10

2021

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The genomic footprint of social stratification in admixing American populations

eLife, 2023-12, Vol.12

2023

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Signatures of environmental genetic adaptation pinpoint pathogens as the main selective pressure through human evolution

PLoS genetics, 2011-11, Vol.7 (11), p.e1002355-e1002355

2011

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ngsLD: evaluating linkage disequilibrium using genotype likelihoods

Bioinformatics, 2019-10, Vol.35 (19), p.3855-3856

2019

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ImaGene: a convolutional neural network to quantify natural selection from genomic data

BMC bioinformatics, 2019-11, Vol.20 (Suppl 9), p.337-337, Article 337

2019

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Greenlandic Inuit show genetic signatures of diet and climate adaptation

Science (American Association for the Advancement of Science), 2015-09, Vol.349 (6254), p.1343-1347

2015

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Oral microbiomes from hunter‐gatherers and traditional farmers reveal shifts in commensal balance and pathogen load linked to diet

Molecular ecology, 2018-01, Vol.27 (1), p.182-195

2018

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Growing inter-Asian connections: Links, rivalries, and challenges in South Korean–Central Asian relations

Journal of Eurasian Studies, 2016, 7(1), 13, pp.39-48

Fumagalli, Matteo

2016

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Survival and divergence in a small group: The extraordinary genomic history of the endangered Apennine brown bear stragglers

Proceedings of the National Academy of Sciences - PNAS, 2017-11, Vol.114 (45), p.E9589-E9597

2017

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Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

Nature communications, 2016-05, Vol.7 (1), p.11693-11693, Article 11693

2016

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Parasites represent a major selective force for interleukin genes and shape the genetic predisposition to autoimmune conditions

The Journal of experimental medicine, 2009-06, Vol.206 (6), p.1395-1408

2009

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Evolutionary genetic dissection of human interferons

The Journal of experimental medicine, 2011-12, Vol.208 (13), p.2747-2759

2011

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Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments

Proceedings of the National Academy of Sciences - PNAS, 2015-12, Vol.112 (50), p.E6889-E6897

2015

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Genetic diversity of CHC22 clathrin impacts its function in glucose metabolism

eLife, 2019-06, Vol.8

2019

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ngsJulia: population genetic analysis of next-generation DNA sequencing data with Julia language [version 2; peer review: 2 approved with reservations]

F1000 research, 2022, Vol.11, p.126

2022

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Widespread balancing selection and pathogen-driven selection at blood group antigen genes

Genome Research, 2009-02, Vol.19 (2), p.199-212

2009

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ngsJulia: population genetic analysis of next-generation DNA sequencing data with Julia language [version 3; peer review: 1 approved, 3 approved with reservations]

F1000 research, 2022-01, Vol.11, p.126-126

2022

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Luang Prabang: Climate change and rapid development

Cities, 2020-02, Vol.97, p.102549, Article 102549

Fumagalli, Matteo

2020

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Human genome variability, natural selection and infectious diseases

Current opinion in immunology, 2014-10, Vol.30, p.9-16

2014

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Inference of natural selection from ancient DNA

Evolution letters, 2020-04, Vol.4 (2), p.94-108

2020

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Both selective and neutral processes drive GC content evolution in the human genome

BMC evolutionary biology, 2008-03, Vol.8, p.99

2008

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Genome-wide identification of susceptibility alleles for viral infections through a population genetics approach

PLoS genetics, 2010-02, Vol.6 (2), p.e1000849-e1000849

2010

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The landscape of human genes involved in the immune response to parasitic worms

BMC evolutionary biology, 2010-08, Vol.10, p.264

2010

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Assessing the effect of sequencing depth and sample size in population genetics inferences

Detecting adaptive introgression in human evolution using convolutional neural networks

The genomic footprint of social stratification in admixing American populations

Signatures of environmental genetic adaptation pinpoint pathogens as the main selective pressure through human evolution

ngsLD: evaluating linkage disequilibrium using genotype likelihoods

ImaGene: a convolutional neural network to quantify natural selection from genomic data

Greenlandic Inuit show genetic signatures of diet and climate adaptation

Oral microbiomes from hunter‐gatherers and traditional farmers reveal shifts in commensal balance and pathogen load linked to diet

Growing inter-Asian connections: Links, rivalries, and challenges in South Korean–Central Asian relations

Survival and divergence in a small group: The extraordinary genomic history of the endangered Apennine brown bear stragglers

Population Genomics Reveal Recent Speciation and Rapid Evolutionary Adaptation in Polar Bears

Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

Parasites represent a major selective force for interleukin genes and shape the genetic predisposition to autoimmune conditions

Evolutionary genetic dissection of human interferons

Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments

Genetic diversity of CHC22 clathrin impacts its function in glucose metabolism

ngsJulia: population genetic analysis of next-generation DNA sequencing data with Julia language [version 2; peer review: 2 approved with reservations]

Widespread balancing selection and pathogen-driven selection at blood group antigen genes

ngsJulia: population genetic analysis of next-generation DNA sequencing data with Julia language [version 3; peer review: 1 approved, 3 approved with reservations]

Luang Prabang: Climate change and rapid development

Human genome variability, natural selection and infectious diseases

Inference of natural selection from ancient DNA

Both selective and neutral processes drive GC content evolution in the human genome

Genome-wide identification of susceptibility alleles for viral infections through a population genetics approach

The landscape of human genes involved in the immune response to parasitic worms

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