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Flying quality analysis performed in a mathematical model of the flight, leads to results that can be tested against the experiments. Even for a simplified mathematical model, usually obtained by neglecting some influences and quantities which are assumed insignificant with respect to the others, the computational effort is quite large. The multi-agent system modeled in this paper exploits different high-performance libraries, including NUMAL, jBLAS, or ATLAS in order to support numerical investigations on flight qualities for various models of unmanned aerial vehicles.