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The Epigenome and Transcriptional Dynamics of Fruit Ripening

Annual review of plant biology, 2017-04, Vol.68, p.61

2017

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3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments

Molecular plant, 2017-12, Vol.10 (12), p.1497-1509

2017

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Recent advances in ethylene research

Journal of Experimental Botany, 2009-08, Vol.60 (12), p.3311-3336

2009

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SlGRAS4 mediates a novel regulatory pathway promoting chilling tolerance in tomato

Plant biotechnology journal, 2020-07, Vol.18 (7), p.1620-1633

2020

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MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato

The Plant cell, 2017-08, Vol.29 (8), p.1883-1906

2017

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Diversity and redundancy of the ripening regulatory networks revealed by the fruitENCODE and the new CRISPR/Cas9 CNR and NOR mutants

Horticulture research, 2019-02, Vol.6 (1), p.39-39, Article 39

2019

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Identification of factors required for m6A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI

The New phytologist, 2017-07, Vol.215 (1), p.157-172

2017

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Plant and animal chromatin three-dimensional organization: similar structures but different functions

Journal of experimental botany, 2020-08, Vol.71 (17), p.5119-5128

2020

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Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors

Nature communications, 2020-10, Vol.11 (1), p.5089-5089, Article 5089

2020

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Chromatin and regulatory differentiation between bundle sheath and mesophyll cells in maize

The Plant journal : for cell and molecular biology, 2022-02, Vol.109 (3), p.675-692

2022

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BEL1‐LIKE HOMEODOMAIN 11 regulates chloroplast development and chlorophyll synthesis in tomato fruit

The Plant journal : for cell and molecular biology, 2018-06, Vol.94 (6), p.1126-1140

2018

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Thylakoid-Bound Polysomes and a Dynamin-Related Protein, FZL, Mediate Critical Stages of the Linear Chloroplast Biogenesis Program in Greening Arabidopsis Cotyledons

The Plant cell, 2018-07, Vol.30 (7), p.1476-1495

2018

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Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening

Nature plants, 2018-10, Vol.4 (10), p.784

2018

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Tissue‐specific Hi‐C analyses of rice, foxtail millet and maize suggest non‐canonical function of plant chromatin domains

Journal of integrative plant biology, 2020-02, Vol.62 (2), p.201-217

2020

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Tomato ethylene receptor-CTR interactions: visualization of NEVER-RIPE interactions with multiple CTRs at the endoplasmic reticulum

Journal of experimental botany, 2008-03, Vol.59 (4), p.965-972

2008

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SnRK2 subfamily I protein kinases regulate ethylene biosynthesis by phosphorylating HB transcription factors to induce ACO1 expression in apple

The New phytologist, 2022-05, Vol.234 (4), p.1262-1277

2022

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Two zinc finger proteins with functions in m6A writing interact with HAKAI

Nature communications, 2022-03, Vol.13 (1), p.1127-1127, Article 1127

2022

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Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality

Proceedings of the National Academy of Sciences - PNAS, 2014-07, Vol.111 (29), p.10642-10647

2014

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Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles

BMC genomics, 2011-09, Vol.12 (1), p.454-454, Article 454

2011

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Thermal-responsive genetic and epigenetic regulation of DAM cluster controlling dormancy and chilling requirement in peach floral buds

Horticulture research, 2020-08, Vol.7 (1), Article 114

2020

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The Transcriptome of the Baculovirus Autographa californica Multiple Nucleopolyhedrovirus in Trichoplusia ni Cells

Journal of Virology, 2013-06, Vol.87 (11), p.6391-6405

2013

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Ethylene suppresses tomato (Solanum lycopersicum) fruit set through modification of gibberellin metabolism

The Plant journal : for cell and molecular biology, 2015-07, Vol.83 (2), p.237-251

2015

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Manipulation of ZDS in tomato exposes carotenoid‐ and ABA‐specific effects on fruit development and ripening

Plant biotechnology journal, 2020-11, Vol.18 (11), p.2210-2224

2020

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BEL1-LIKE HOMEODOMAIN4 regulates chlorophyll accumulation, chloroplast development, and cell wall metabolism in tomato fruit

Journal of experimental botany, 2020-09, Vol.71 (18), p.5549-5561

2020

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Inter-species grafting caused extensive and heritable alterations of DNA methylation in Solanaceae plants

PloS one, 2013-04, Vol.8 (4), p.e61995-e61995

2013

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The Epigenome and Transcriptional Dynamics of Fruit Ripening

3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments

Recent advances in ethylene research

SlGRAS4 mediates a novel regulatory pathway promoting chilling tolerance in tomato

MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato

Diversity and redundancy of the ripening regulatory networks revealed by the fruitENCODE and the new CRISPR/Cas9 CNR and NOR mutants

Identification of factors required for m6A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI

Plant and animal chromatin three-dimensional organization: similar structures but different functions

Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors

Chromatin and regulatory differentiation between bundle sheath and mesophyll cells in maize

BEL1‐LIKE HOMEODOMAIN 11 regulates chloroplast development and chlorophyll synthesis in tomato fruit

Thylakoid-Bound Polysomes and a Dynamin-Related Protein, FZL, Mediate Critical Stages of the Linear Chloroplast Biogenesis Program in Greening Arabidopsis Cotyledons

Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening

Tissue‐specific Hi‐C analyses of rice, foxtail millet and maize suggest non‐canonical function of plant chromatin domains

Tomato ethylene receptor-CTR interactions: visualization of NEVER-RIPE interactions with multiple CTRs at the endoplasmic reticulum

SnRK2 subfamily I protein kinases regulate ethylene biosynthesis by phosphorylating HB transcription factors to induce ACO1 expression in apple

Two zinc finger proteins with functions in m6A writing interact with HAKAI

Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality

Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles

Thermal-responsive genetic and epigenetic regulation of DAM cluster controlling dormancy and chilling requirement in peach floral buds

The Transcriptome of the Baculovirus Autographa californica Multiple Nucleopolyhedrovirus in Trichoplusia ni Cells

Ethylene suppresses tomato (Solanum lycopersicum) fruit set through modification of gibberellin metabolism

Manipulation of ZDS in tomato exposes carotenoid‐ and ABA‐specific effects on fruit development and ripening

BEL1-LIKE HOMEODOMAIN4 regulates chlorophyll accumulation, chloroplast development, and cell wall metabolism in tomato fruit

Inter-species grafting caused extensive and heritable alterations of DNA methylation in Solanaceae plants

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