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Enhanced molecular dynamic simulation studies unravel long-range effects caused by sequence variations and partner binding in RNA aptamers

Molecular therapy. Nucleic acids, 2023-12, Vol.34, p.102039-102039, Article 102039

2023

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Exosite Binding in Thrombin: A Global Structural/Dynamic Overview of Complexes with Aptamers and Other Ligands

International journal of molecular sciences, 2021-10, Vol.22 (19), p.10803

2021

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Alphafold Predictions Provide Insights into the Structural Features of the Functional Oligomers of All Members of the KCTD Family

International journal of molecular sciences, 2022-11, Vol.23 (21), p.13346

2022

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Monoclonal Antibodies: A Prospective and Retrospective View

Current medicinal chemistry, 2021-01, Vol.28 (3), p.435

2021

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Structural and Dynamic-Based Characterization of the Recognition Patterns of E7 and TRP-2 Epitopes by MHC Class I Receptors through Computational Approaches

International journal of molecular sciences, 2024-02, Vol.25 (3), p.1384

2024

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A global analysis of conservative and non-conservative mutations in SARS-CoV-2 detected in the first year of the COVID-19 world-wide diffusion

Scientific reports, 2021-12, Vol.11 (1), p.24495-24495, Article 24495

2021

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A Comprehensive Analysis of the Structural Recognition between KCTD Proteins and Cullin 3

International journal of molecular sciences, 2024-02, Vol.25 (3), p.1881

2024

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Structural Insights into Protein–Aptamer Recognitions Emerged from Experimental and Computational Studies

International journal of molecular sciences, 2023-11, Vol.24 (22), p.16318

2023

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KCTD15 deregulation is associated with alterations of the NF-κB signaling in both pathological and physiological model systems

Scientific reports, 2021-09, Vol.11 (1), p.18237-18237, Article 18237

2021

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Targeting Protein-Protein Interfaces with Peptides: The Contribution of Chemical Combinatorial Peptide Library Approaches

International journal of molecular sciences, 2023-04, Vol.24 (9), p.7842

2023

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Loop size optimization induces a strong thermal stabilization of the thioredoxin fold

The FEBS journal, 2019-05, Vol.286 (9), p.1752-1764

2019

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Solid-state optical properties of self-assembling amyloid-like peptides with different charged states at the terminal ends

Scientific reports, 2022-01, Vol.12 (1), p.759-759, Article 759

2022

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A Comprehensive Analysis of the Intrinsic Visible Fluorescence Emitted by Peptide/Protein Amyloid-like Assemblies

International journal of molecular sciences, 2023-05, Vol.24 (9), p.8372

2023

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Fabrication of fluorescent nanospheres by heating PEGylated tetratyrosine nanofibers

Scientific reports, 2021-01, Vol.11 (1), p.2470-11, Article 2470

2021

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Exploring the structural basis to develop efficient multi-epitope vaccines displaying interaction with HLA and TAP and TLR3 molecules to prevent NIPAH infection, a global threat to human health

PloS one, 2023-03, Vol.18 (3), p.e0282580-e0282580

2023

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Development of a Protein Scaffold for Arginine Sensing Generated through the Dissection of the Arginine-Binding Protein from Thermotoga maritima

International journal of molecular sciences, 2020-10, Vol.21 (20), p.7503

2020

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Characterizing the consensus residue specificity and surface of BCL-2 binding to BH3 ligands using the Knob-Socket model

PloS one, 2023-02, Vol.18 (2), p.e0281463-e0281463

2023

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A Structure-Based Mechanism for the Denaturing Action of Urea, Guanidinium Ion and Thiocyanate Ion

Biology (Basel, Switzerland), 2022-12, Vol.11 (12), p.1764

2022

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The Action of Chemical Denaturants: From Globular to Intrinsically Disordered Proteins

Biology (Basel, Switzerland), 2023-05, Vol.12 (5), p.754

2023

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Amyloid-Like Aggregation in Diseases and Biomaterials: Osmosis of Structural Information

Frontiers in bioengineering and biotechnology, 2021-03, Vol.9, p.641372-641372

2021

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Polyproline and triple helix motifs in host-pathogen recognition

Current protein & peptide science, 2012-12, Vol.13 (8), p.855

2012

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Identification and characterization of heteroclitic peptides in TCR-binding positions with improved HLA-binding efficacy

Journal of translational medicine, 2021-02, Vol.19 (1), p.89-89, Article 89

2021

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Cullin 3 Recognition Is Not a Universal Property among KCTD Proteins

PloS one, 2015-05, Vol.10 (5), p.e0126808-e0126808

2015

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Peptide bond distortions from planarity: new insights from quantum mechanical calculations and peptide/protein crystal structures

PloS one, 2011-09, Vol.6 (9), p.e24533-e24533

2011

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Molecular Dynamics Analyses of Cross-β-Spine Steric Zipper Models: β-Sheet Twisting and Aggregation

Proceedings of the National Academy of Sciences - PNAS, 2006-08, Vol.103 (31), p.11533-11538

2006

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Enhanced molecular dynamic simulation studies unravel long-range effects caused by sequence variations and partner binding in RNA aptamers

Exosite Binding in Thrombin: A Global Structural/Dynamic Overview of Complexes with Aptamers and Other Ligands

Alphafold Predictions Provide Insights into the Structural Features of the Functional Oligomers of All Members of the KCTD Family

Monoclonal Antibodies: A Prospective and Retrospective View

Structural and Dynamic-Based Characterization of the Recognition Patterns of E7 and TRP-2 Epitopes by MHC Class I Receptors through Computational Approaches

A global analysis of conservative and non-conservative mutations in SARS-CoV-2 detected in the first year of the COVID-19 world-wide diffusion

A Comprehensive Analysis of the Structural Recognition between KCTD Proteins and Cullin 3

Structural Insights into Protein–Aptamer Recognitions Emerged from Experimental and Computational Studies

KCTD15 deregulation is associated with alterations of the NF-κB signaling in both pathological and physiological model systems

Targeting Protein-Protein Interfaces with Peptides: The Contribution of Chemical Combinatorial Peptide Library Approaches

Loop size optimization induces a strong thermal stabilization of the thioredoxin fold

Solid-state optical properties of self-assembling amyloid-like peptides with different charged states at the terminal ends

A Comprehensive Analysis of the Intrinsic Visible Fluorescence Emitted by Peptide/Protein Amyloid-like Assemblies

Fabrication of fluorescent nanospheres by heating PEGylated tetratyrosine nanofibers

Exploring the structural basis to develop efficient multi-epitope vaccines displaying interaction with HLA and TAP and TLR3 molecules to prevent NIPAH infection, a global threat to human health

Development of a Protein Scaffold for Arginine Sensing Generated through the Dissection of the Arginine-Binding Protein from Thermotoga maritima

Characterizing the consensus residue specificity and surface of BCL-2 binding to BH3 ligands using the Knob-Socket model

A Structure-Based Mechanism for the Denaturing Action of Urea, Guanidinium Ion and Thiocyanate Ion

The Action of Chemical Denaturants: From Globular to Intrinsically Disordered Proteins

Amyloid-Like Aggregation in Diseases and Biomaterials: Osmosis of Structural Information

Polyproline and triple helix motifs in host-pathogen recognition

Identification and characterization of heteroclitic peptides in TCR-binding positions with improved HLA-binding efficacy

Cullin 3 Recognition Is Not a Universal Property among KCTD Proteins

Peptide bond distortions from planarity: new insights from quantum mechanical calculations and peptide/protein crystal structures

Molecular Dynamics Analyses of Cross-β-Spine Steric Zipper Models: β-Sheet Twisting and Aggregation

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