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Cooperative antimicrobial action of melittin on lipid membranes: A coarse-grained molecular dynamics study

Biochimica et biophysica acta. Biomembranes, 2022-09, Vol.1864 (9), p.183955-183955, Article 183955

2022

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All-atom molecular dynamics study of impact fracture of glassy polymers. I: Molecular mechanism of brittleness of PMMA and ductility of PC

Polymer (Guilford), 2019-09, Vol.178, p.121570, Article 121570

2019

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Seipin accumulates and traps diacylglycerols and triglycerides in its ring-like structure

Proceedings of the National Academy of Sciences - PNAS, 2021-03, Vol.118 (10), p.1

2021

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Permeability across lipid membranes

Biochimica et biophysica acta, 2016-10, Vol.1858 (10), p.2254-2265

Shinoda, Wataru

2016

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Free energy analysis of membrane pore formation process in the presence of multiple melittin peptides

Biochimica et biophysica acta. Biomembranes, 2019-07, Vol.1861 (7), p.1409-1419

2019

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Rapid estimation of elastic constants by molecular dynamics simulation under constant stress

Physical review. B, Condensed matter and materials physics, 2004-04, Vol.69 (13), Article 134103

2004

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Coarse-grained molecular modeling of non-ionic surfactant self-assembly

Soft matter, 2008, Vol.4 (12), p.2454

2008

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Chain-End Modification: A Starting Point for Controlling Polymer Crystal Nucleation

Macromolecules, 2021-02, Vol.54 (4), p.1599-1610

2021

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Molecular mechanism of material deformation and failure in butadiene rubber: Insight from all-atom molecular dynamics simulation using a bond breaking potential model

Polymer (Guilford), 2019-04, Vol.170, p.113-119

2019

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Precise calculation of the local pressure tensor in Cartesian and spherical coordinates in LAMMPS

Computer physics communications, 2015-05, Vol.190, p.120-128

2015

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Exploring the effect of pendent side chain length on the structural and mechanical properties of hydrated perfluorosulfonic acid polymer membranes by molecular dynamics simulation

Polymer (Guilford), 2018-06, Vol.146, p.53-62

2018

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Janus dendrimersomes coassembled from fluorinated, hydrogenated, and hybrid Janus dendrimers as models for cell fusion and fission

Proceedings of the National Academy of Sciences - PNAS, 2017-08, Vol.114 (34), p.E7045-E7053

2017

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The Amphotericin B–Ergosterol Complex Spans a Lipid Bilayer as a Single-Length Assembly

Biochemistry (Easton), 2019-12, Vol.58 (51), p.5188-5196

2019

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Conformation and Orientation of Branched Acyl Chains Responsible for the Physical Stability of Diphytanoylphosphatidylcholine

Biochemistry (Easton), 2020-10, Vol.59 (40), p.3929-3938

2020

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Cholesterol-Induced Conformational Change in the Sphingomyelin Headgroup

Biophysical journal, 2019-07, Vol.117 (2), p.307-318

2019

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Free energy profile of permeation of Entecavir through Hepatitis B virus capsid studied by molecular dynamics calculation

Pure and applied chemistry, 2020-10, Vol.92 (10), p.1585-1594

2020

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pSPICA Force Field Extended for Proteins and Peptides

Journal of chemical information and modeling, 2024-01, Vol.64 (2), p.532-542

2024

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Effective interaction between small unilamellar vesicles as probed by coarse-grained molecular dynamics simulations

Pure and applied chemistry, 2014-02, Vol.86 (2), p.215-222

2014

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Nanoscale carbon particles and the stability of lipid bilayers

Soft matter, 2011, Vol.7 (3), p.1139-1146

2011

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Regioselective Recognition of a [60]Fullerene-Bisadduct by Cyclodextrin

Journal of organic chemistry, 2013-03, Vol.78 (6), p.2534-2541

2013

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Liquid Structures and Ion Dynamics of Ionic Liquids Viewed from Intermolecular Interactions

Chemical record, 2023-08, Vol.23 (8), p.e202200272-n/a

2023

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Effect of different substituents on the water-solubility and stability properties of 1 : 2 [60]fullerene derivative·gamma-cyclodextrin complexes

Organic & biomolecular chemistry, 2013-12, Vol.11 (45), p.7843-7851

2013

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Rigid-body dynamics in the isothermal-isobaric ensemble: A test on the accuracy and computational efficiency

Journal of computational chemistry, 2003-06, Vol.24 (8), p.920-930

2003

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Effects of Li ion-solvent interaction on ionic transport and electrochemical properties in highly concentrated cyclic carbonate electrolytes

Journal of non-crystalline solids. X, 2021-09, Vol.11-12, p.100071, Article 100071

2021

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Efficient free energy calculation of water across lipid membranes

Journal of computational chemistry, 2008-09, Vol.29 (12), p.1912-1918

2008

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Cooperative antimicrobial action of melittin on lipid membranes: A coarse-grained molecular dynamics study

All-atom molecular dynamics study of impact fracture of glassy polymers. I: Molecular mechanism of brittleness of PMMA and ductility of PC

Seipin accumulates and traps diacylglycerols and triglycerides in its ring-like structure

Permeability across lipid membranes

Free energy analysis of membrane pore formation process in the presence of multiple melittin peptides

Rapid estimation of elastic constants by molecular dynamics simulation under constant stress

Coarse-grained molecular modeling of non-ionic surfactant self-assembly

Chain-End Modification: A Starting Point for Controlling Polymer Crystal Nucleation

Molecular mechanism of material deformation and failure in butadiene rubber: Insight from all-atom molecular dynamics simulation using a bond breaking potential model

Precise calculation of the local pressure tensor in Cartesian and spherical coordinates in LAMMPS

Exploring the effect of pendent side chain length on the structural and mechanical properties of hydrated perfluorosulfonic acid polymer membranes by molecular dynamics simulation

Janus dendrimersomes coassembled from fluorinated, hydrogenated, and hybrid Janus dendrimers as models for cell fusion and fission

The Amphotericin B–Ergosterol Complex Spans a Lipid Bilayer as a Single-Length Assembly

Conformation and Orientation of Branched Acyl Chains Responsible for the Physical Stability of Diphytanoylphosphatidylcholine

Cholesterol-Induced Conformational Change in the Sphingomyelin Headgroup

Free energy profile of permeation of Entecavir through Hepatitis B virus capsid studied by molecular dynamics calculation

pSPICA Force Field Extended for Proteins and Peptides

Effective interaction between small unilamellar vesicles as probed by coarse-grained molecular dynamics simulations

Nanoscale carbon particles and the stability of lipid bilayers

Regioselective Recognition of a [60]Fullerene-Bisadduct by Cyclodextrin

Liquid Structures and Ion Dynamics of Ionic Liquids Viewed from Intermolecular Interactions

Effect of different substituents on the water-solubility and stability properties of 1 : 2 [60]fullerene derivative·gamma-cyclodextrin complexes

Rigid-body dynamics in the isothermal-isobaric ensemble: A test on the accuracy and computational efficiency

Effects of Li ion-solvent interaction on ionic transport and electrochemical properties in highly concentrated cyclic carbonate electrolytes

Efficient free energy calculation of water across lipid membranes

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