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SPICA Force Field for Lipid Membranes: Domain Formation Induced by Cholesterol

Journal of chemical theory and computation, 2019-01, Vol.15 (1), p.762-774

2019

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Cooperative antimicrobial action of melittin on lipid membranes: A coarse-grained molecular dynamics study

Biochimica et biophysica acta. Biomembranes, 2022-09, Vol.1864 (9), p.183955-183955, Article 183955

2022

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Cholesterol Effect on Water Permeability through DPPC and PSM Lipid Bilayers: A Molecular Dynamics Study

The journal of physical chemistry. B, 2011-12, Vol.115 (51), p.15241-15250

2011

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All-atom molecular dynamics study of impact fracture of glassy polymers. I: Molecular mechanism of brittleness of PMMA and ductility of PC

Polymer (Guilford), 2019-09, Vol.178, p.121570, Article 121570

2019

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Coarse-grained molecular dynamics study of membrane fusion: Curvature effects on free energy barriers along the stalk mechanism

The Journal of chemical physics, 2015-12, Vol.143 (24), p.243112-243112

2015

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Seipin accumulates and traps diacylglycerols and triglycerides in its ring-like structure

Proceedings of the National Academy of Sciences - PNAS, 2021-03, Vol.118 (10), p.1

2021

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Permeability across lipid membranes

Biochimica et biophysica acta, 2016-10, Vol.1858 (10), p.2254-2265

Shinoda, Wataru

2016

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A coarse-grain model for entangled polyethylene melts and polyethylene crystallization

The Journal of chemical physics, 2019-06, Vol.150 (24), p.244901-244901

2019

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Free energy analysis along the stalk mechanism of membrane fusion

Soft matter, 2014-05, Vol.10 (17), p.3048-3054

2014

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Free energy analysis of membrane pore formation process in the presence of multiple melittin peptides

Biochimica et biophysica acta. Biomembranes, 2019-07, Vol.1861 (7), p.1409-1419

2019

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Molecular Dynamics Study of the Morphology of Hydrated Perfluorosulfonic Acid Polymer Membranes

Journal of physical chemistry. C, 2016-11, Vol.120 (45), p.25832-25842

2016

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Zwitterionic Lipid Assemblies: Molecular Dynamics Studies of Monolayers, Bilayers, and Vesicles Using a New Coarse Grain Force Field

The journal of physical chemistry. B, 2010-05, Vol.114 (20), p.6836-6849

2010

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Molecular dynamics study of thermodynamic stability and dynamics of [Li(glyme)]+ complex in lithium-glyme solvate ionic liquids

The Journal of chemical physics, 2018-05, Vol.148 (19), p.193809-193809

2018

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Pivotal Role of Interdigitation in Interleaflet Interactions: Implications from Molecular Dynamics Simulations

The journal of physical chemistry letters, 2020-07, Vol.11 (13), p.5171-5176

2020

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Rapid estimation of elastic constants by molecular dynamics simulation under constant stress

Physical review. B, Condensed matter and materials physics, 2004-04, Vol.69 (13), Article 134103

2004

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Exact long-range Coulombic energy calculation for net charged systems neutralized by uniformly distributed background charge using fast multipole method and its application to efficient free energy calculation

The Journal of chemical physics, 2020-06, Vol.152 (24), p.244115-244115

2020

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pSPICA: A Coarse-Grained Force Field for Lipid Membranes Based on a Polar Water Model

Journal of chemical theory and computation, 2020-01, Vol.16 (1), p.782-793

2020

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Molecular dynamics simulations of cholesterol-rich membranes using a coarse-grained force field for cyclic alkanes

The Journal of chemical physics, 2015-12, Vol.143 (24), p.243144-243144

2015

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Molecular Dynamics Simulations of Ionic Liquids: Cation and Anion Dependence of Self-Diffusion Coefficients of Ions

The journal of physical chemistry. B, 2009-08, Vol.113 (31), p.10641-10649

2009

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Molecular Behavior of Linear Alkylbenzene Sulfonate in Hydrated Crystal, Tilted Gel, and Liquid Crystal Phases Studied by Molecular Dynamics Simulation

Langmuir, 2019-08, Vol.35 (33), p.10877-10884

2019

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All-atom molecular dynamics study of hepatitis B virus containing pregenome RNA in solution

The Journal of chemical physics, 2021-10, Vol.155 (14), p.145101-145101

2021

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Coarse-grained molecular modeling of non-ionic surfactant self-assembly

Soft matter, 2008, Vol.4 (12), p.2454

2008

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Structure of Hydrated Crystal (Lc), Tilted Gel (Lβ′), and Liquid Crystal (Lα) Phases of Linear Alkylbenzene Sulfonate (LAS) Studied by X‑ray Diffraction and Molecular Dynamics Simulation

Langmuir, 2019-07, Vol.35 (27), p.9011-9019

2019

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Chain-End Modification: A Starting Point for Controlling Polymer Crystal Nucleation

Macromolecules, 2021-02, Vol.54 (4), p.1599-1610

2021

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Molecular Level Origin of Ion Dynamics in Highly Concentrated Electrolytes

The journal of physical chemistry. B, 2023-12, Vol.127 (48), p.10422-10433

2023

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SPICA Force Field for Lipid Membranes: Domain Formation Induced by Cholesterol

Cooperative antimicrobial action of melittin on lipid membranes: A coarse-grained molecular dynamics study

Cholesterol Effect on Water Permeability through DPPC and PSM Lipid Bilayers: A Molecular Dynamics Study

All-atom molecular dynamics study of impact fracture of glassy polymers. I: Molecular mechanism of brittleness of PMMA and ductility of PC

Coarse-grained molecular dynamics study of membrane fusion: Curvature effects on free energy barriers along the stalk mechanism

Seipin accumulates and traps diacylglycerols and triglycerides in its ring-like structure

Permeability across lipid membranes

A coarse-grain model for entangled polyethylene melts and polyethylene crystallization

Free energy analysis along the stalk mechanism of membrane fusion

Free energy analysis of membrane pore formation process in the presence of multiple melittin peptides

Molecular Dynamics Study of the Morphology of Hydrated Perfluorosulfonic Acid Polymer Membranes

Zwitterionic Lipid Assemblies: Molecular Dynamics Studies of Monolayers, Bilayers, and Vesicles Using a New Coarse Grain Force Field

Molecular dynamics study of thermodynamic stability and dynamics of [Li(glyme)]+ complex in lithium-glyme solvate ionic liquids

Pivotal Role of Interdigitation in Interleaflet Interactions: Implications from Molecular Dynamics Simulations

Rapid estimation of elastic constants by molecular dynamics simulation under constant stress

Exact long-range Coulombic energy calculation for net charged systems neutralized by uniformly distributed background charge using fast multipole method and its application to efficient free energy calculation

pSPICA: A Coarse-Grained Force Field for Lipid Membranes Based on a Polar Water Model

Molecular dynamics simulations of cholesterol-rich membranes using a coarse-grained force field for cyclic alkanes

Molecular Dynamics Simulations of Ionic Liquids: Cation and Anion Dependence of Self-Diffusion Coefficients of Ions

Molecular Behavior of Linear Alkylbenzene Sulfonate in Hydrated Crystal, Tilted Gel, and Liquid Crystal Phases Studied by Molecular Dynamics Simulation

All-atom molecular dynamics study of hepatitis B virus containing pregenome RNA in solution

Coarse-grained molecular modeling of non-ionic surfactant self-assembly

Structure of Hydrated Crystal (Lc), Tilted Gel (Lβ′), and Liquid Crystal (Lα) Phases of Linear Alkylbenzene Sulfonate (LAS) Studied by X‑ray Diffraction and Molecular Dynamics Simulation

Chain-End Modification: A Starting Point for Controlling Polymer Crystal Nucleation

Molecular Level Origin of Ion Dynamics in Highly Concentrated Electrolytes

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