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Generation of Transmitted/Founder HIV-1 Infectious Molecular Clones and Characterization of Their Replication Capacity in CD4 T Lymphocytes and Monocyte-Derived Macrophages

Journal of Virology, 2012-03, Vol.86 (5), p.2715-2728

2012

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Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa

Viruses, 2022-07, Vol.14 (8), p.1673

2022

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Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection

Nature communications, 2018-05, Vol.9 (1), p.1928-15, Article 1928

2018

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Deciphering Human Immunodeficiency Virus Type 1 Transmission and Early Envelope Diversification by Single-Genome Amplification and Sequencing

Journal of Virology, 2008-04, Vol.82 (8), p.3952-3970

2008

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Human Immunodeficiency Virus Type 1 env Clones from Acute and Early Subtype B Infections for Standardized Assessments of Vaccine-Elicited Neutralizing Antibodies

Journal of Virology, 2005-08, Vol.79 (16), p.10108-10125

2005

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Cross-sectional detection of acute HIV infection: timing of transmission, inflammation and antiretroviral therapy

PloS one, 2011-05, Vol.6 (5), p.e19617-e19617

2011

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Macrophage HIV-1 infection and the gastrointestinal tract reservoir

Journal of leukocyte biology, 2003-11, Vol.74 (5), p.642-649

2003

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HIV-Specific Functional Antibody Responses in Breast Milk Mirror Those in Plasma and Are Primarily Mediated by IgG Antibodies

Journal of Virology, 2011-09, Vol.85 (18), p.9555-9567

2011

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HIV-1 Gag-Pol Sequences from Ugandan Early Infections Reveal Sequence Variants Associated with Elevated Replication Capacity

Viruses, 2021-01, Vol.13 (2), p.171

2021

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Origin and Evolution of HIV-1 in Breast Milk Determined by Single-Genome Amplification and Sequencing

Journal of Virology, 2011-03, Vol.85 (6), p.2751-2763

2011

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The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection

The Journal of experimental medicine, 2009-06, Vol.206 (6), p.1253-1272

2009

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Phylogeography of HIV-1 suggests that Ugandan fishing communities are a sink for, not a source of, virus from general populations

Scientific reports, 2019-01, Vol.9 (1), p.1051-1051, Article 1051

2019

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Clonal amplification and maternal-infant transmission of nevirapine-resistant HIV-1 variants in breast milk following single-dose nevirapine prophylaxis

Retrovirology, 2013-08, Vol.10 (1), p.88-88, Article 88

2013

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Prevalence of viral load suppression, predictors of virological failure and patterns of HIV drug resistance after 12 and 48 months on first-line antiretroviral therapy: a national cross-sectional survey in Uganda

Journal of antimicrobial chemotherapy, 2020-05, Vol.75 (5), p.1280-1289

2020

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Antibody neutralization and escape by HIV-1

Nature (London), 2003-03, Vol.422 (6929), p.307-312

2003

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Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1

PLoS pathogens, 2009-01, Vol.5 (1), p.e1000274-e1000274

2009

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HIV-1-Specific CD8 T Cells Exhibit Limited Cross-Reactivity during Acute Infection

The Journal of immunology (1950), 2016-04, Vol.196 (8), p.3276-3286

2016

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Modeling sequence evolution in acute HIV-1 infection

Journal of theoretical biology, 2009-11, Vol.261 (2), p.341-360

2009

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Comparison of Viral Env Proteins from Acute and Chronic Infections with Subtype C Human Immunodeficiency Virus Type 1 Identifies Differences in Glycosylation and CCR5 Utilization and Suggests a New Strategy for Immunogen Design

Journal of Virology, 2013-07, Vol.87 (13), p.7218-7233

2013

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High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men

PLoS pathogens, 2010-05, Vol.6 (5), p.e1000890-e1000890

2010

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Generation of Transmitted/Founder HIV-1 Infectious Molecular Clones and Characterization of Their Replication Capacity in CD4 T Lymphocytes and Monocyte-Derived Macrophages

Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa

Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection

Deciphering Human Immunodeficiency Virus Type 1 Transmission and Early Envelope Diversification by Single-Genome Amplification and Sequencing

Human Immunodeficiency Virus Type 1 env Clones from Acute and Early Subtype B Infections for Standardized Assessments of Vaccine-Elicited Neutralizing Antibodies

Relationship between functional profile of HIV-1 specific CD8 T cells and epitope variability with the selection of escape mutants in acute HIV-1 infection

Cross-sectional detection of acute HIV infection: timing of transmission, inflammation and antiretroviral therapy

Genetic and Neutralization Properties of Subtype C Human Immunodeficiency Virus Type 1 Molecular env Clones from Acute and Early Heterosexually Acquired Infections in Southern Africa

Characterization of Near Full-Length Transmitted/Founder HIV-1 Subtype D and A/D Recombinant Genomes in a Heterosexual Ugandan Population (2006-2011)

Macrophage HIV-1 infection and the gastrointestinal tract reservoir

HIV-Specific Functional Antibody Responses in Breast Milk Mirror Those in Plasma and Are Primarily Mediated by IgG Antibodies

HIV-1 Gag-Pol Sequences from Ugandan Early Infections Reveal Sequence Variants Associated with Elevated Replication Capacity

Origin and Evolution of HIV-1 in Breast Milk Determined by Single-Genome Amplification and Sequencing

The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection

Postnatally-transmitted HIV-1 Envelope variants have similar neutralization-sensitivity and function to that of nontransmitted breast milk variants

Phylogeography of HIV-1 suggests that Ugandan fishing communities are a sink for, not a source of, virus from general populations

Clonal amplification and maternal-infant transmission of nevirapine-resistant HIV-1 variants in breast milk following single-dose nevirapine prophylaxis

Prevalence of viral load suppression, predictors of virological failure and patterns of HIV drug resistance after 12 and 48 months on first-line antiretroviral therapy: a national cross-sectional survey in Uganda

Antibody neutralization and escape by HIV-1

Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1

HIV-1-Specific CD8 T Cells Exhibit Limited Cross-Reactivity during Acute Infection

Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection

Modeling sequence evolution in acute HIV-1 infection

Comparison of Viral Env Proteins from Acute and Chronic Infections with Subtype C Human Immunodeficiency Virus Type 1 Identifies Differences in Glycosylation and CCR5 Utilization and Suggests a New Strategy for Immunogen Design

High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men

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