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Induced fit, conformational selection and independent dynamic segments: an extended view of binding events

Trends in biochemical sciences (Amsterdam. Regular ed.), 2010-10, Vol.35 (10), p.539-546

2010

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Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics

PLoS Computational Biology, 2016-04, Vol.12 (4), p.e1004619-e1004619

2016

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Stabilities and Conformations of Alzheimer's β-Amyloid Peptide Oligomers (Aβ16-22, Aβ16-35, and Aβ10-35): Sequence Effects

Proceedings of the National Academy of Sciences - PNAS, 2002-10, Vol.99 (22), p.14126-14131

2002

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Mapping the Conformation Space of Wildtype and Mutant H-Ras with a Memetic, Cellular, and Multiscale Evolutionary Algorithm

PLoS computational biology, 2015-09, Vol.11 (9), p.e1004470-e1004470

2015

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Hot Regions in Protein–Protein Interactions: The Organization and Contribution of Structurally Conserved Hot Spot Residues

Journal of molecular biology, 2005-02, Vol.345 (5), p.1281-1294

2005

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Flexible Cullins in Cullin-RING E3 Ligases Allosterically Regulate Ubiquitination

The Journal of biological chemistry, 2011-11, Vol.286 (47), p.40934-40942

2011

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Residues crucial for maintaining short paths in network communication mediate signaling in proteins

Molecular systems biology, 2006, Vol.2 (1), p.2006.0019-n/a

2006

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Synonymous Mutations and Ribosome Stalling Can Lead to Altered Folding Pathways and Distinct Minima

Journal of molecular biology, 2008-11, Vol.383 (2), p.281-291

2008

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Multiscale coarse-graining of the protein energy landscape

PLoS computational biology, 2010-06, Vol.6 (6), p.e1000827-e1000827

2010

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Residue centrality, functionally important residues, and active site shape: Analysis of enzyme and non‐enzyme families

Protein science, 2006-09, Vol.15 (9), p.2120-2128

2006

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Computing Biology

PLoS computational biology, 2016-07, Vol.12 (7), p.e1005050-e1005050

2016

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Polyglutamine induced misfolding of huntingtin exon1 is modulated by the flanking sequences

PLoS computational biology, 2010-04, Vol.6 (4), p.e1000772-e1000772

2010

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Evolutionary optimization of protein folding

PLoS computational biology, 2013-01, Vol.9 (1), p.e1002861-e1002861

2013

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A generic mechanism of emergence of amyloid protofilaments from disordered oligomeric aggregates

PLoS computational biology, 2008-11, Vol.4 (11), p.e1000222-e1000222

2008

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A new, structurally nonredundant, diverse data set of protein–protein interfaces and its implications

Protein science, 2004-04, Vol.13 (4), p.1043-1055

2004

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Amyloidogenic regions and interaction surfaces overlap in globular proteins related to conformational diseases

PLoS computational biology, 2009-08, Vol.5 (8), p.e1000476

2009

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Folding and binding cascades: Dynamic landscapes and population shifts

Protein Science, 2000-01, Vol.9 (1), p.10-19

2000

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Aggregation propensity of the human proteome

PLoS computational biology, 2008-10, Vol.4 (10), p.e1000199-e1000199

2008

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Thermodynamic selection of steric zipper patterns in the amyloid cross-beta spine

PLoS computational biology, 2009-09, Vol.5 (9), p.e1000492-e1000492

2009

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Folding and Binding Cascades: Shifts in Energy Landscapes

Proceedings of the National Academy of Sciences - PNAS, 1999-08, Vol.96 (18), p.9970-9972

1999

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Structural characteristics of novel protein folds

PLoS computational biology, 2010-04, Vol.6 (4), p.e1000750-e1000750

2010

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Short Peptide Amyloid Organization: Stabilities and Conformations of the Islet Amyloid Peptide NFGAIL

Biophysical journal, 2003-03, Vol.84 (3), p.1884-1894

2003

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Dynamic prestress in a globular protein

PLoS computational biology, 2012-05, Vol.8 (5), p.e1002509-e1002509

2012

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Hydrogen-bond driven loop-closure kinetics in unfolded polypeptide chains

PLoS computational biology, 2010-01, Vol.6 (1), p.e1000645-e1000645

2010

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Aβ(1-42) fibril structure illuminates self-recognition and replication of amyloid in Alzheimer's disease

Nature structural & molecular biology, 2015-06, Vol.22 (6), p.499

2015

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Induced fit, conformational selection and independent dynamic segments: an extended view of binding events

Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics

Stabilities and Conformations of Alzheimer's β-Amyloid Peptide Oligomers (Aβ16-22, Aβ16-35, and Aβ10-35): Sequence Effects

Mapping the Conformation Space of Wildtype and Mutant H-Ras with a Memetic, Cellular, and Multiscale Evolutionary Algorithm

Hot Regions in Protein–Protein Interactions: The Organization and Contribution of Structurally Conserved Hot Spot Residues

Flexible Cullins in Cullin-RING E3 Ligases Allosterically Regulate Ubiquitination

Residues crucial for maintaining short paths in network communication mediate signaling in proteins

Synonymous Mutations and Ribosome Stalling Can Lead to Altered Folding Pathways and Distinct Minima

Multiscale coarse-graining of the protein energy landscape

Residue centrality, functionally important residues, and active site shape: Analysis of enzyme and non‐enzyme families

Computing Biology

Polyglutamine induced misfolding of huntingtin exon1 is modulated by the flanking sequences

Evolutionary optimization of protein folding

A generic mechanism of emergence of amyloid protofilaments from disordered oligomeric aggregates

A new, structurally nonredundant, diverse data set of protein–protein interfaces and its implications

Amyloidogenic regions and interaction surfaces overlap in globular proteins related to conformational diseases

Folding and binding cascades: Dynamic landscapes and population shifts

Aggregation propensity of the human proteome

Thermodynamic selection of steric zipper patterns in the amyloid cross-beta spine

Folding and Binding Cascades: Shifts in Energy Landscapes

Structural characteristics of novel protein folds

Short Peptide Amyloid Organization: Stabilities and Conformations of the Islet Amyloid Peptide NFGAIL

Dynamic prestress in a globular protein

Hydrogen-bond driven loop-closure kinetics in unfolded polypeptide chains

Aβ(1-42) fibril structure illuminates self-recognition and replication of amyloid in Alzheimer's disease

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