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Allostery: An Overview of Its History, Concepts, Methods, and Applications

PLoS computational biology, 2016-06, Vol.12 (6), p.e1004966-e1004966

2016

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Protein Ensembles: How Does Nature Harness Thermodynamic Fluctuations for Life? The Diverse Functional Roles of Conformational Ensembles in the Cell

Chemical reviews, 2016-06, Vol.116 (11), p.6516-6551

2016

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A unified view of "how allostery works"

PLoS computational biology, 2014-02, Vol.10 (2), p.e1003394-e1003394

2014

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Induced fit, conformational selection and independent dynamic segments: an extended view of binding events

Trends in biochemical sciences (Amsterdam. Regular ed.), 2010-10, Vol.35 (10), p.539-546

2010

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Advancements and challenges in computational biology

PLoS computational biology, 2015-01, Vol.11 (1), p.e1004053-e1004053

Nussinov, Ruth

2015

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Allostery without a conformational change? Revisiting the paradigm

Current opinion in structural biology, 2015-02, Vol.30, p.17-24

2015

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The Structural Basis of Oncogenic Mutations G12, G13 and Q61 in Small GTPase K-Ras4B

Scientific reports, 2016-02, Vol.6 (1), p.21949-21949, Article 21949

2016

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Release of Cytochrome C from Bax Pores at the Mitochondrial Membrane

Scientific reports, 2017-06, Vol.7 (1), p.2635-13, Article 2635

2017

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Enzyme dynamics point to stepwise conformational selection in catalysis

Current opinion in chemical biology, 2010-10, Vol.14 (5), p.652-659

2010

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Drugging Ras GTPase: a comprehensive mechanistic and signaling structural view

Chemical Society reviews, 2016-09, Vol.45 (18), p.4929-4952

2016

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Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics

PLoS Computational Biology, 2016-04, Vol.12 (4), p.e1004619-e1004619

2016

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Ras Conformational Ensembles, Allostery, and Signaling

Chemical reviews, 2016-06, Vol.116 (11), p.6607-6665

2016

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Energetic redistribution in allostery to execute protein function

Proceedings of the National Academy of Sciences - PNAS, 2017-07, Vol.114 (29), p.7480-7482

2017

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Artificial intelligence in COVID-19 drug repurposing

The Lancet. Digital health, 2020-12, Vol.2 (12), p.e667-e676

2020

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Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM

Nature protocols, 2011-09, Vol.6 (9), p.1341-1354

2011

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Network approaches and applications in biology

PLoS computational biology, 2017-10, Vol.13 (10), p.e1005771-e1005771

2017

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Zinc ions promote Alzheimer Aβ aggregation via population shift of polymorphic states

Proceedings of the National Academy of Sciences - PNAS, 2010-05, Vol.107 (21), p.9490-9495

2010

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Computational network biology: Data, models, and applications

Physics reports, 2020-03, Vol.846, p.1-66

2020

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The Role of Protein Loops and Linkers in Conformational Dynamics and Allostery

Chemical reviews, 2016-06, Vol.116 (11), p.6391-6423

2016

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The significance of the 2013 Nobel Prize in Chemistry and the challenges ahead

PLoS computational biology, 2014-01, Vol.10 (1), p.e1003423-e1003423

Nussinov, Ruth

2014

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The role of dynamic conformational ensembles in biomolecular recognition

Nature chemical biology, 2009-11, Vol.5 (11), p.789-796

2009

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Phosphorylated Calmodulin Promotes PI3K Activation by Binding to the SH2 Domains

Biophysical journal, 2017-11, Vol.113 (9), p.1956-1967

2017

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Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers

PLoS computational biology, 2019-03, Vol.15 (3), p.e1006658-e1006658

2019

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Selective Molecular Recognition in Amyloid Growth and Transmission and Cross-Species Barriers

Journal of molecular biology, 2012-08, Vol.421 (2-3), p.172-184

2012

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Membrane-associated Ras dimers are isoform-specific: K-Ras dimers differ from H-Ras dimers

Biochemical journal, 2016-06, Vol.473 (12), p.1719-1732

2016

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Allostery: An Overview of Its History, Concepts, Methods, and Applications

Protein Ensembles: How Does Nature Harness Thermodynamic Fluctuations for Life? The Diverse Functional Roles of Conformational Ensembles in the Cell

A unified view of "how allostery works"

Induced fit, conformational selection and independent dynamic segments: an extended view of binding events

Advancements and challenges in computational biology

Allostery without a conformational change? Revisiting the paradigm

The Structural Basis of Oncogenic Mutations G12, G13 and Q61 in Small GTPase K-Ras4B

Release of Cytochrome C from Bax Pores at the Mitochondrial Membrane

Enzyme dynamics point to stepwise conformational selection in catalysis

Drugging Ras GTPase: a comprehensive mechanistic and signaling structural view

Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics

Ras Conformational Ensembles, Allostery, and Signaling

Energetic redistribution in allostery to execute protein function

Artificial intelligence in COVID-19 drug repurposing

Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM

Network approaches and applications in biology

Zinc ions promote Alzheimer Aβ aggregation via population shift of polymorphic states

Computational network biology: Data, models, and applications

The Role of Protein Loops and Linkers in Conformational Dynamics and Allostery

The significance of the 2013 Nobel Prize in Chemistry and the challenges ahead

The role of dynamic conformational ensembles in biomolecular recognition

Phosphorylated Calmodulin Promotes PI3K Activation by Binding to the SH2 Domains

Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers

Selective Molecular Recognition in Amyloid Growth and Transmission and Cross-Species Barriers

Membrane-associated Ras dimers are isoform-specific: K-Ras dimers differ from H-Ras dimers

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