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Programming biological models in Python using PySB

Molecular systems biology, 2013, Vol.9 (1), p.646-n/a

2013

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MuSyC is a consensus framework that unifies multi-drug synergy metrics for combinatorial drug discovery

Nature communications, 2021-07, Vol.12 (1), p.4607-4607, Article 4607

2021

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Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers

PLoS computational biology, 2019-10, Vol.15 (10), p.e1007343-e1007343

2019

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Unified tumor growth mechanisms from multimodel inference and dataset integration

PLoS computational biology, 2023-07, Vol.19 (7), p.e1011215-e1011215

2023

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Model certainty in cellular network-driven processes with missing data

PLoS computational biology, 2023-04, Vol.19 (4), p.e1011004-e1011004

2023

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Hydrophobicity of protein surfaces: Separating geometry from chemistry

Proceedings of the National Academy of Sciences - PNAS, 2008-02, Vol.105 (7), p.2274-2279

2008

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Data-driven structural analysis of small cell lung cancer transcription factor network suggests potential subtype regulators and transition pathways

NPJ systems biology and applications, 2023-10, Vol.9 (1), p.55-55, Article 55

2023

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A Probabilistic Approach to Explore Signal Execution Mechanisms With Limited Experimental Data

Frontiers in genetics, 2020-07, Vol.11, p.686-686

2020

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Unsupervised logic-based mechanism inference for network-driven biological processes

PLoS computational biology, 2021-06, Vol.17 (6), p.e1009035-e1009035

2021

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Measurements and Analysis of Large-Scale Fading Characteristics in Curved Subway Tunnels at 920 MHz, 2400 MHz, and 5705 MHz

IEEE transactions on intelligent transportation systems, 2015-10, Vol.16 (5), p.2393-2405

2015

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Understanding Nature's Design for a Nanosyringe

Proceedings of the National Academy of Sciences - PNAS, 2004-03, Vol.101 (13), p.4431-4434

2004

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Automatic mechanistic inference from large families of Boolean models generated by Monte Carlo tree search

Frontiers in cell and developmental biology, 2023-08, Vol.11, p.1198359-1198359

2023

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Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective

PLoS computational biology, 2017-02, Vol.13 (2), p.e1005352-e1005352

2017

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Exploring the efficacy of nanofluids for lithium-ion battery thermal management

International journal of heat and mass transfer, 2017-09, Vol.112, p.779-794

2017

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CASP11--An Evaluation of a Modular BCL::Fold-Based Protein Structure Prediction Pipeline

PloS one, 2016-04, Vol.11 (4), p.e0152517-e0152517

2016

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Broadening Our Understanding of Hurricanes and Forests on the Caribbean Island of Puerto Rico: Where and What Should We Study Now?

Forests, 2019-09, Vol.10 (9), p.710

2019

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Interactive Multiresolution Visualization of Cellular Network Processes

iScience, 2020-01, Vol.23 (1), p.100748-100748, Article 100748

2020

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Competition and allostery govern substrate selectivity of cyclooxygenase-2

Proceedings of the National Academy of Sciences - PNAS, 2015-10, Vol.112 (40), p.12366-12371

2015

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Charting the Fragmented Landscape of Drug Synergy

Trends in pharmacological sciences (Regular ed.), 2020-04, Vol.41 (4), p.266-280

2020

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Cardiolipin-Dependent Properties of Model Mitochondrial Membranes from Molecular Simulations

Biophysical journal, 2019-08, Vol.117 (3), p.429-444

2019

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Vortex generators for active thermal management in lithium-ion battery systems

International journal of heat and mass transfer, 2018-09, Vol.124, p.800-815

2018

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PyDREAM: high-dimensional parameter inference for biological models in python

Bioinformatics, 2018-02, Vol.34 (4), p.695-697

2018

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Processes in DNA damage response from a whole-cell multi-omics perspective

iScience, 2022-11, Vol.25 (11), p.105341-105341, Article 105341

2022

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Novel 3-D Non-Stationary Wideband Models for Massive MIMO Channels

IEEE transactions on wireless communications, 2018-05, Vol.17 (5), p.2893-2905

2018

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A 3D Non-Stationary Wideband Massive MIMO Channel Model Based on Ray-Level Evolution

IEEE transactions on communications, 2022-01, Vol.70 (1), p.621-634

2022

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Programming biological models in Python using PySB

MuSyC is a consensus framework that unifies multi-drug synergy metrics for combinatorial drug discovery

Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers

Unified tumor growth mechanisms from multimodel inference and dataset integration

Model certainty in cellular network-driven processes with missing data

Hydrophobicity of protein surfaces: Separating geometry from chemistry

Data-driven structural analysis of small cell lung cancer transcription factor network suggests potential subtype regulators and transition pathways

A Probabilistic Approach to Explore Signal Execution Mechanisms With Limited Experimental Data

Unsupervised logic-based mechanism inference for network-driven biological processes

Measurements and Analysis of Large-Scale Fading Characteristics in Curved Subway Tunnels at 920 MHz, 2400 MHz, and 5705 MHz

Understanding Nature's Design for a Nanosyringe

Automatic mechanistic inference from large families of Boolean models generated by Monte Carlo tree search

Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective

Exploring the efficacy of nanofluids for lithium-ion battery thermal management

CASP11--An Evaluation of a Modular BCL::Fold-Based Protein Structure Prediction Pipeline

Broadening Our Understanding of Hurricanes and Forests on the Caribbean Island of Puerto Rico: Where and What Should We Study Now?

Interactive Multiresolution Visualization of Cellular Network Processes

Competition and allostery govern substrate selectivity of cyclooxygenase-2

Charting the Fragmented Landscape of Drug Synergy

Cardiolipin-Dependent Properties of Model Mitochondrial Membranes from Molecular Simulations

Vortex generators for active thermal management in lithium-ion battery systems

PyDREAM: high-dimensional parameter inference for biological models in python

Processes in DNA damage response from a whole-cell multi-omics perspective

Novel 3-D Non-Stationary Wideband Models for Massive MIMO Channels

A 3D Non-Stationary Wideband Massive MIMO Channel Model Based on Ray-Level Evolution

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