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Phylogenetic tree building in the genomic age

Nature reviews. Genetics, 2020-07, Vol.21 (7), p.428

2020

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Topology-dependent asymmetry in systematic errors affects phylogenetic placement of Ctenophora and Xenacoelomorpha

Science advances, 2020-12, Vol.6 (50)

2020

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Evolutionary history of Polyneoptera and its implications for our understanding of early winged insects

Proceedings of the National Academy of Sciences - PNAS, 2019-02, Vol.116 (8), p.3024-3029

2019

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Species relationships and divergence times in beeches: new insights from the inclusion of 53 young and old fossils in a birth-death clock model

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2016-07, Vol.371 (1699)

2016

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An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola)

BMC ecology and evolution, 2020-06, Vol.20 (1), p.64

2020

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Lack of support for Deuterostomia prompts reinterpretation of the first Bilateria

Science advances, 2021-03, Vol.7 (12)

2021

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Molecular phylogeny and historical biogeography of the Anatolian lizard Apathya (Squamata, Lacertidae)

Molecular phylogenetics and evolution, 2013-03, Vol.66 (3), p.992-1001

2013

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Systematic errors in orthology inference and their effects on evolutionary analyses

iScience, 2021-02, Vol.24 (2), p.102110-102110, Article 102110

2021

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A general species delimitation method with applications to phylogenetic placements

Bioinformatics, 2013-11, Vol.29 (22), p.2869-2876

2013

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Automated, phylogeny-based genotype delimitation of the Hepatitis Viruses HBV and HCV

PeerJ (San Francisco, CA), 2019-10, Vol.7, p.e7754-e7754, Article e7754

2019

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Correction to: An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola)

BMC ecology and evolution, 2020-10, Vol.20, p.1

2020

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Eocene Loranthaceae pollen pushes back divergence ages for major splits in the family

PeerJ (San Francisco, CA), 2017-06, Vol.5, p.e3373-e3373, Article e3373

2017

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Beginner's Guide on the Use of PAML to Detect Positive Selection

Molecular biology and evolution, 2023-04, Vol.40 (4)

2023

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Systematic errors in phylogenetic trees

Current biology, 2021-01, Vol.31 (2), p.R59-R64

2021

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DNA Sequences Are as Useful as Protein Sequences for Inferring Deep Phylogenies

Systematic biology, 2023-11, Vol.72 (5), p.1119

2023

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Bayesian Phylogenetic Inference using Relaxed-clocks and the Multispecies Coalescent

Molecular biology and evolution, 2022-08, Vol.39 (8)

2022

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Diversification in the mountains: Evolutionary history and molecular phylogeny of Anatolian rock lizards

Molecular phylogenetics and evolution, 2023-03, Vol.180, p.107675-107675, Article 107675

2023

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A review of phylogeographic analyses of animal taxa from the Aegean and surrounding regions

Journal of zoological systematics and evolutionary research, 2015-02, Vol.53 (1), p.18-32

2015

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Using More Than the Oldest Fossils: Dating Osmundaceae with Three Bayesian Clock Approaches

Systematic biology, 2015-05, Vol.64 (3), p.396-405

2015

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A reinvestigation of phylogeny and divergence times of the Ablepharus kitaibelii species complex (Sauria, Scincidae) based on mtDNA and nuDNA genes

Molecular phylogenetics and evolution, 2016-10, Vol.103, p.199-214

2016

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Separate histories in both sides of the Mediterranean: phylogeny and niche evolution of ocellated lizards

Journal of biogeography, 2016-06, Vol.43 (6), p.1242-1253

2016

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SPART: A versatile and standardized data exchange format for species partition information

Molecular ecology resources, 2022-01, Vol.22 (1), p.430-438

2022

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A near-complete species-level phylogeny of uropeltid snakes harnessing historical museum collections as a DNA source

Molecular phylogenetics and evolution, 2023-01, Vol.178, p.107651-107651, Article 107651

2023

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The evolutionary history of two lizards (Squamata: Lacertidae) is linked to the geological development of Iran

Zoologischer Anzeiger, 2017-09, Vol.270, p.49-56

2017

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Comparative phylogeography of six herpetofauna species in Cyprus: late Miocene to Pleistocene colonization routes

Biological journal of the Linnean Society, 2013-03, Vol.108 (3), p.619-635

2013

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Phylogenetic tree building in the genomic age

Topology-dependent asymmetry in systematic errors affects phylogenetic placement of Ctenophora and Xenacoelomorpha

Evolutionary history of Polyneoptera and its implications for our understanding of early winged insects

Species relationships and divergence times in beeches: new insights from the inclusion of 53 young and old fossils in a birth-death clock model

An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola)

Lack of support for Deuterostomia prompts reinterpretation of the first Bilateria

Molecular phylogeny and historical biogeography of the Anatolian lizard Apathya (Squamata, Lacertidae)

Systematic errors in orthology inference and their effects on evolutionary analyses

A general species delimitation method with applications to phylogenetic placements

Automated, phylogeny-based genotype delimitation of the Hepatitis Viruses HBV and HCV

Correction to: An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola)

Eocene Loranthaceae pollen pushes back divergence ages for major splits in the family

Beginner's Guide on the Use of PAML to Detect Positive Selection

Systematic errors in phylogenetic trees

DNA Sequences Are as Useful as Protein Sequences for Inferring Deep Phylogenies

Bayesian Phylogenetic Inference using Relaxed-clocks and the Multispecies Coalescent

Diversification in the mountains: Evolutionary history and molecular phylogeny of Anatolian rock lizards

A review of phylogeographic analyses of animal taxa from the Aegean and surrounding regions

Using More Than the Oldest Fossils: Dating Osmundaceae with Three Bayesian Clock Approaches

A reinvestigation of phylogeny and divergence times of the Ablepharus kitaibelii species complex (Sauria, Scincidae) based on mtDNA and nuDNA genes

Separate histories in both sides of the Mediterranean: phylogeny and niche evolution of ocellated lizards

SPART: A versatile and standardized data exchange format for species partition information

A near-complete species-level phylogeny of uropeltid snakes harnessing historical museum collections as a DNA source

The evolutionary history of two lizards (Squamata: Lacertidae) is linked to the geological development of Iran

Comparative phylogeography of six herpetofauna species in Cyprus: late Miocene to Pleistocene colonization routes

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